TABLE 3.
Comparison of pLMP2 binding to B*1402, B*2705, and B*2709
Only direct hydrogen bonds (HB, ≤3.5Å), salt bridges (SB, ≤3.5Å), van der Waals interactions (vdW, ≤4.0Å), and amino aromatic interactions (AA) between peptide residues and HLA residues are listed. In case of peptide residues, van der Waals interactions between backbone atoms and between atoms of neighboring residues are not shown. Water-mediated interactions are not shown as well.
* This bond exists in only one of the two molecules in the asymmetric unit.