Table I.
Microarray analysis of genes differentially expressed in high- and low-MK bulks
All genes listed showed significant difference (P < 0.05) in hybridization intensity between high- and low-MK bulks. cDNA sequences from the customized microarray that were up-regulated or down-regulated by more than 7-fold are shown.
| Gene Codea | Annotation | Ratiob |
|---|---|---|
| DN167657 | A protein related to a Pseudomonas thioesterase (Sh allele) | +336.6 |
| AI779239 | rRNA-16S ribosomal RNA | +62.6 |
| AF230371 | Allene oxide synthase | +46.7 |
| BI925004 | Plasma membrane intrinsic protein | +39 |
| BI931228 | Unknown | +27.3 |
| AW616884 | Dehydrodolichyl diphosphate synthase | +24.1 |
| DN169296 | DNA repair protein RAD23 | +18.3 |
| DB719610 | Calcium-binding EF hand family protein | +15.5 |
| DN168712 | Rubisco small subunit 1A | +14.7 |
| DN169129 | Major latex protein-related (Sh allele) | +12.9 |
| AW039905 | Peroxisomal protein involved in the activation of fatty acids | +11.8 |
| AI777019 | Unknown | +11.2 |
| AW615872 | Glycosyltransferase family 14 protein | +11.1 |
| BF097749 | Mitochondrial 26S ribosomal RNA protein | +9.2 |
| BW688217 | Unknown | +9.1 |
| BM412813 | Methyltransferase family 2 protein | +8.8 |
| DN170232 | Protein kinase | +8.4 |
| DN171038 | Casein kinase 1 protein family | +7.2 |
| DB683900 | X-Pro dipeptidase | −7.1 |
| BG131749 | A protein related to a Pseudomonas thioesterase (Sl allele) | −7.5 |
| AI772024 | Unknown | −7.6 |
| DB722221 | Unknown | −7.7 |
| DN168641 | PSII oxygen-evolving complex 23 | −7.8 |
| ES893822 | Cell wall protein precursor | −7.9 |
| BG643000 | Phospholipase A2β | −8.0 |
| BW690350 | GRAM domain-containing protein/abscisic acid-responsive protein-related | −8.3 |
| AW034502 | Cytochrome P450, putative | −8.9 |
| BG1237766 | Aldo/keto-reductase family protein | −9.5 |
| BI928231 | NAD-dependent epimerase/dehydratase family protein | −10.1 |
| BI932160 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | −10.6 |
| BG128416 | Unknown | −10.9 |
| AW624755 | Major latex protein-related | −11.9 |
| ES896328 | Chaperonin | −12.5 |
| BE434841 | 3-Ketoacyl-ACP synthetase 2 nuclear gene | −15.2 |
a
Corresponding GenBank accession numbers with the highest similarity are shown.
b
Ratio depicts the difference in average ratios of high-MK over low-MK bulks in four hybridizations for all of the probes that represent the same sequence.