TABLE 2.
pfdhfr mutation or group (no. of isolates)a | Haplotype | Microsatellite haplotype at kbb: |
Pic | ||||||
---|---|---|---|---|---|---|---|---|---|
−7.7 | −5.2 | −3.9 | −0.3 | 0.3 | +1.28 | +5.6 | |||
A16N51C59N108I164 (9) | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 | 0.11 |
H2 | 11 | 13 | 13 | 17 | 16 | 10 | 11 | 0.11 | |
H3 | 10 | 21 | 17 | 17 | 12 | 12 | 11 | 0.11 | |
H4 | 10 | 21 | 21 | 17 | 14 | 11 | 7 | 0.11 | |
H5 | 10 | 21 | 17 | 18 | 13 | 11 | 11 | 0.11 | |
H6 | 10 | 21 | 13 | 17 | 12 | 11 | 11 | 0.11 | |
H7 | 10 | 14 | 13 | 17 | 16 | 10 | 7 | 0.11 | |
H8 | 10 | 21 | 17 | 17 | 12 | 11 | 7 | 0.11 | |
H9 | 10 | 14 | 13 | 17 | 13 | 11 | 7 | 0.11 | |
A16N51R59N108I164 (92) | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 | 0.55 |
H10 | 10 | 13 | 13 | 17 | 16 | 10 | 11 | 0.11 | |
H7 | 10 | 14 | 13 | 17 | 16 | 10 | 7 | 0.044 | |
H11 | 10 | 11 | 13 | 17 | 16 | 10 | 11 | 0.033 | |
H12 | 10 | 14 | 13 | 17 | 16 | 11 | 11 | 0.033 | |
H13 | 10 | 14 | 13 | 17 | 17 | 10 | 11 | 0.033 | |
H14 | 10 | 14 | 13 | 17 | 16 | 10 | 12 | 0.022 | |
H15 | 10 | 14 | 13 | 17 | 15 | 10 | 11 | 0.022 | |
H16 | 10 | 11 | 13 | 13 | 12 | 11 | 16 | 0.011 | |
H17 | 10 | 11 | 18 | 17 | 12 | 11 | 12 | 0.011 | |
H18 | 10 | 14 | 13 | 17 | 16 | 10 | 16 | 0.011 | |
H19 | 10 | 11 | 18 | 17 | 16 | 10 | 11 | 0.011 | |
H20 | 10 | 11 | 23 | 17 | 16 | 10 | 11 | 0.011 | |
H21 | 10 | 16 | 17 | 17 | 12 | 11 | 7 | 0.011 | |
H22 | 10 | 13 | 13 | 17 | 15 | 10 | 11 | 0.011 | |
H23 | 10 | 13 | 13 | 17 | 16 | 10 | 10 | 0.011 | |
H24 | 10 | 12 | 13 | 17 | 16 | 10 | 11 | 0.011 | |
H25 | 11 | 14 | 13 | 17 | 16 | 10 | 11 | 0.011 | |
H26 | 10 | 21 | 13 | 17 | 12 | 10 | 7 | 0.011 | |
H27 | 19 | 14 | 13 | 17 | 16 | 10 | 11 | 0.011 | |
H28 | 11 | 14 | 13 | 17 | 17 | 10 | 11 | 0.011 | |
A16I51R59N108I164 (14) | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 | 0.50 |
H13 | 10 | 14 | 13 | 17 | 17 | 10 | 11 | 0.21 | |
H29 | 10 | 14 | 13 | 17 | 18 | 10 | 11 | 0.071 | |
H9 | 10 | 14 | 13 | 17 | 13 | 11 | 7 | 0.071 | |
H12 | 10 | 14 | 13 | 17 | 16 | 11 | 11 | 0.071 | |
H30 | 10 | 14 | 13 | 18 | 16 | 10 | 11 | 0.071 | |
A16N51R59N108L164 (3) | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 | 1.00 |
A16I51R59N108L164 (52) | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 | 0.85 |
H10 | 10 | 13 | 13 | 17 | 16 | 10 | 11 | 0.134 | |
H31 | 10 | 14 | 13 | 15 | 16 | 10 | 11 | 0.019 | |
Thai isolates | H1 | 10 | 14 | 13 | 17 | 16 | 10 | 11 |
Mutated amino acids are shown in bold.
Locations of microsatellites around pfdhfr in kb. Negative positions are upstream of pfdhfr and positive positions are downstream of pfdhfr (20).
Pi is the frequency of the ith haplotype in the population.