TABLE 2.
Diversity in each clone library
| Sample | No. of sequenced clones after removal of chimeras | No. of OTU0.03s | Diversity indices for OTU0.03s |
||
|---|---|---|---|---|---|
| Chao1 (LC, HC)a | Simpson (1/D) | Shannon (H′)b | |||
| TSBA | 1,036 | 195 | 441 (343, 604) | 10.28 | 3.42 ± 0.13 |
| TSCO | 995 | 163 | 450 (324, 677) | 8.25 | 3.17 ± 0.12 |
| TSNI | 1,064 | 145 | 308 (308, 438) | 6.76 | 2.92 ± 0.12 |
| TSNS | 1,078 | 129 | 301 (290, 439) | 7.32 | 2.91 ± 0.11 |
| TSSU | 1,051 | 167 | 297 (243, 390) | 8.22 | 3.21 ± 0.12 |
| Total | 5,224 | 799 | |||
a
LC, lower confidence interval at 95% probability; HC, higher confidence interval at 95% probability.
b
Sannon index ± confidence interval at 95% probability.