TABLE 3.
SNPs identified between C. pneumoniae genomesa
| SNP type and strain | No. of SNPs relative tob: |
||||
|---|---|---|---|---|---|
| AR39 | LPCoLN | TW-183 | CWL029 | J138 | |
| Synonymous | |||||
| LPCoLN | 2,969 | 47 | 43 | 6 | |
| TW-183 | 105 | 2,980 (2,922/58) | 41 | 3 | |
| CWL029 | 103 | 2,986 (2,926/60) | 126 (64/62) | 6 | |
| J138 | 58 | 3,015 (2,963/52) | 157 (102/55) | 149 (97/52) | |
| Nonsynonymous | |||||
| LPCoLN | 2,435 | 80 | 70 | 18 | |
| TW-183 | 144 | 2,419 (2,355/64) | 70 | 17 | |
| CWL029 | 125 | 2,420 (2,365/70) | 123 (71/51) | 17 | |
| J138 | 128 | 2,527 (2,417/1100) | 238 (127/111) | 219 (108/111) | |
a
SNPs were identified in three-way genome comparisons with respect to the CDS of the reference strain, C. pneumoniae AR39.
b
Numbers of shared (lighface) and separating unique (boldface) SNPs are shown. The individual branch lengths of the separating SNPs are given in parentheses.