TABLE 1.
Probabilities of the appearance of MIRU-VNTR alleles (copy numbers) in the 79 PETRA lineage strains
| MIRU-VNTR locus | Probability of copy number (allele)a |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| NPPb | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
| 02 | 1.000 | |||||||||
| 04 (ETR D) | 1.000 | |||||||||
| 10 | 0.013 | 0.089 | 0.101 | 0.570 | 0.215 | 0.000 | 0.013 | |||
| 16 | 0.013 | 0.127 | 0.835 | 0.025 | ||||||
| 20 | 1.000 | |||||||||
| 23 | 1.000 | |||||||||
| 24 | 1.000 | |||||||||
| 26 | 0.165 | 0.000 | 0.013 | 0.063 | 0.570 | 0.013 | 0.152 | 0.013 | 0.013 | |
| 27 | 0.013 | 0.025 | 0.962 | |||||||
| 31 (ETR E) | 0.013 | 0.013 | 0.165 | 0.709 | 0.101 | |||||
| 39 | 1.000 | |||||||||
| 40 | 0.013 | 0.025 | 0.747 | 0.215 | ||||||
| ETR A | 0.127 | 0.000 | 0.000 | 0.000 | 0.759 | 0.000 | 0.114 | |||
| ETR B | 0.025 | 0.975 | ||||||||
| ETR C | 1.000 | |||||||||
| QUB11b | 0.025 | 0.025 | 0.937 | 0.000 | 0.013 | |||||
a
The probability (number of strains/number of total strains) of the appearance of MIRU-VNTR copy number (allele) in 79 PETRA lineage strains is shown. For each MIRU-VNTR locus, the probabilities add up to 1 total for the different copy numbers or alleles. The major alleles are indicated by boldface type, and the invariant alleles are shown in italic boldface type.
b
NPP, no PCR product.