TABLE 3.
Locus | Size (bp) | No. of PICs | No. of PICs/bp | AUTa | MPT length (no. of steps)b | CIc | RId | No. of haplotypese | No. of FIESC species supported as monophyleticf |
---|---|---|---|---|---|---|---|---|---|
EF-1-α | 717 | 162 | 0.23 | 95 | 517 | 0.61 | 0.92 | 51 | 20 |
LSU+ITS rRNA genes | 1,135 | 11 | 0.01 | 35 | 58 | 0.57 | 0.92 | 21 | 1 |
RPB2 | 1,766 | 220 | 0.12 | 184 | 629 | 0.58 | 0.92 | 46 | 19 |
CAM | 704 | 133 | 0.19 | 109 | 385 | 0.64 | 0.94 | 45 | 14 |
EF-1-α plus rRNA genes | 1,852 | 173 | 0.09 | 130 | 602 | 0.57 | 0.91 | 59 | — |
EF-1-α plus RPB2 | 2,483 | 382 | 0.15 | 279 | 1,181 | 0.57 | 0.91 | 57 | — |
EF-1-α plus CAM | 1,421 | 295 | 0.21 | 204 | 934 | 0.59 | 0.92 | 54 | — |
rRNA genes plus RPB2 | 2,901 | 231 | 0.08 | 219 | 714 | 0.55 | 0.91 | 54 | — |
rRNA genes plus CAM | 1,839 | 144 | 0.08 | 144 | 469 | 0.58 | 0.93 | 56 | — |
RPB2 plus CAM | 2,470 | 353 | 0.14 | 293 | 1,062 | 0.69 | 0.92 | 53 | — |
Combined | 4,322 | 526 | 0.12 | 423 | 1,695 | 0.67 | 0.91 | 62 | 21 |
AUT, autapomorphy or a derived character.
MPT, most parsimonious tree.
CI, consistency index.
RI, retention index.
Number of multilocus haplotypes or STs determined using COLLAPSE, version 1.1.
Based on maximum parsimony bootstrap support. —, comparison not made.