TABLE 3.
Averages of estimated pairwise genetic distances (d) by Kimura's two-parameter method for the different genomic regions in 13 field isolates of ToCV
Isolate | RNA1 |
RNA2 |
||||||
---|---|---|---|---|---|---|---|---|
RdRp |
Hsp70h |
CP |
CPm |
|||||
d | SE | d | SE | d | SE | d | SE | |
AT1/97 | 0.00358 | 0.00142 | 0.00206 | 0.00116 | 0.00024 | 0.00021 | 0.00070 | 0.00038 |
AT3/98 | 0.00046 | 0.00031 | 0.00000 | 0.00000 | 0.00000 | 0.00000 | 0.00124 | 0.00046 |
AT24/99 | 0.00037 | 0.00026 | 0.00106 | 0.00053 | 0.00000 | 0.00000 | 0.00021 | 0.00020 |
AT80/99 | 0.00803 | 0.00213 | NDb | ND | ND | ND | ND | ND |
AT198/00 | 0.00251 | 0.00061 | 0.00065 | 0.00036 | 0.00022 | 0.00021 | 0.00070 | 0.00038 |
AT230/00 | 0.00034 | 0.00032 | 0.00098 | 0.00038 | 0.00131 | 0.00084 | 0.00044 | 0.00030 |
AT205/00 | 0.00087 | 0.00037 | 0.00070 | 0.00040 | 0.00037 | 0.00025 | 0.00000 | 0.00000 |
AT36/02 | 0.00056 | 0.00031 | 0.00082 | 0.00039 | 0.00062 | 0.00035 | 0.00023 | 0.00022 |
AT45/02 | 0.00018 | 0.00018 | 0.00061 | 0.00035 | 0.00138 | 0.00064 | 0.00070 | 0.00040 |
AT31/03 | 0.00056 | 0.00030 | 0.00128 | 0.00087 | 0.00042 | 0.00030 | 0.00023 | 0.00023 |
AT138/03 | 0.00020 | 0.00019 | 0.00022 | 0.00022 | 0.00175 | 0.00128 | 0.00110 | 0.00062 |
AT204/04 | 0.00056 | 0.00031 | 0.00022 | 0.00021 | 0.00047 | 0.00033 | 0.00023 | 0.00023 |
AT379/04 | 0.00111 | 0.00044 | 0.00082 | 0.00039 | 0.00024 | 0.00022 | 0.00023 | 0.00024 |
Totala | 0.00650 | 0.00143 | 0.00133 | 0.00042 | 0.00206 | 0.00086 | 0.00277 | 0.00118 |
Estimated pairwise genetic distances by Kimura's two-parameter method after all the viral variants from the different isolates within each genomic region were pooled.
ND, not determined.