Table 6.
Summary of PTPN22 haplotype structure and association results
| Haplotype (frequency) | SNP (frequency) |
||||
|---|---|---|---|---|---|
| SNP2 (23.9%) | R620W (8.6%) | SNP27 (41.7%) | SNP35 (20.6%) | SNP37 (17.8%) | |
| H1 (12.0%) | A | C | T | C | A |
| H2 (8.6%) | A | T | T | C | A |
| H3 (3.3%) | A | C | T | T | A |
| H4 (17.8%) | G | C | T | T | C |
| H5–10 (58.3%) | G | C | C | T | A |
Extracted from Carlton et al. (tables 1 and 3). SNP frequencies are estimated from the pooled cohort of 1,797 controls (see Carl-ton et al. table 1). Alleles associated with increased disease risk are shown in bold.