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. 2009 Dec;183(4):1315–1325. doi: 10.1534/genetics.109.108266

TABLE 1.

Molecular evolutionary parameters of the Pi-ta gene in Oryza species analyzed in this study

Species Sample no. Nucleotide θw πsilent D D* F* Hn
O. sativa 55 4250 0.00206 0.00287 1.36790 0.43956 0.92805 0.16426
O. sativa indica 23 4250 0.00235 0.00257 −0.02930 −0.18210 −0.15867 −0.29793
O. sativa japonica 32 4250 0.00143 0.00230 1.63577 1.25707 1.62162 0.41988
O. sativa japonica Asian cultivar 16 4250 0.00174 0.00244 0.78421 0.47668 0.64840 0.01420
O. sativa japonica U. S. cultivar 16 4250 0.00174 0.00226 1.41409 1.53348** 1.72883* 0.64640
O. rufipogon 91 3988 0.00888 0.00522 −2.14289* −2.09795 −2.54113* −3.65945
O. nivara 5 4003 0.01520 0.01322 −1.06420 −1.06420 −1.15583 −3.39370
O. glaberrima 10 4002 0.00966 0.01366 1.88503 1.03161 1.41069 0.19870
O. barthii
 9
 4002
 0.01066
 0.01336
 1.21069
 1.07971
 1.24886
 −1.63819

θw, Watterson's nucleotide diversity estimator (1975) based on silent site; π, Nei's nucleotide diversity (1987) based on silent site; D, Tajima's D statistics (1989) based on the differences between the number of segregating sites and the average number of nucleotide differences; D* and F*, the neutral test proposed by Fu and Li (1993); and Hn, normalized Fay and Wu's H test statistics. Statistical significance: **P < 0.02 and *P < 0.05.