Table 2.
Experimentally determined binding free energy for phenol derivatives
catechol | phenol | |||
---|---|---|---|---|
Phenol analogs | ΔGb,exp (Kcal/mol) | ΔGb,calc (Kcal/mol) | ΔGb,calc(Kcal/mol) | PDB IDs |
2-propylphenol | −5.33 ± 0.05 | −6.13 | −3.05 | 3HTB |
phenol | −5.24 | – | – | 1LI2 |
5-chloro-2-methylphenol | −5.04 ± 0.07 | −7.54 | −1.32 | 3HT8 |
2-ethylphenol | −4.57 ± 0.11 | −5.15 | −1.14 | 3HT7 |
2-methylphenol | −4.44 ± 0.11 | −4.31 | −2.55 | 3HT6 |
catechol | −4.16 ± 0.03 | – | −4.88† | 1XEP |
2-ethoxyphenol | −4.02 ± 0.03 | −4.16 | −4.25 | 3HU8 |
2-methoxyphenol | > −2.0* | −2.76 | −3.84 | 3HT9 |
Reference ligands are in italics. Free energy of binding determined by ITC at 10°C;
indicates the binding free energy was estimated as ΔGb ≥ −2.0. The binding free energies for the six phenol derivatives are shown; for each compound ΔGb,calc was calculated from the predicted relative binding free energy and the experimentally determined ΔGb of the reference compounds catechol or phenol.
The corrected retrospective result for the phenol to catechol transformation is given (described in Results: Analysis of predictions).