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. 2009 Sep 18;18(11):2371–2383. doi: 10.1002/pro.247

Table I.

Amino Acid Residues Identified by Geometric Calculations as Forming GABA-Binding Pockets in the Pentameric Model of the ρ1 GABAC Receptor

Residue ω-value ASA Residue ω-value ASA Residue ω-value ASA
Q83 0.027 0.09 Q16017 0.089 0.21 T21817,37,38 0.025 0.13
E85 0.020 0.20 L16617 0.034 0.28 I22217 0.017 0.45
L87 0.080 0.08 Y16717 0.010 0.07 S22317 0.042 0.27
Y10215,37 0.002 0.03 S16817,37,39 0.005 0.25 L22417 0.006 0.05
R10415,39 0.017 0.08 L16917 0.011 0.04 S22517 0.011 0.05
H10515,39,40 0.005 0.17 R17017,39 0.002 0.08 Q22617 0.005 0.73
M122 0.014 0.24 C177 0.002 0.01 F22717 0.002 0.20
F13817,37 0.004 0.03 S192 0.031 0.21 L238 0.070 0.38
V14017 0.027 0.12 E194 0.002 0.09 F24037 0.089 0.29
H14117,40 0.004 0.22 E196 0.002 0.03 Y24137 0.017 0.56
T152 0.021 0.04 S197 0.007 0.02 S24237,39 0.041 0.65
D153 0.041 0.23 Y19815 0.005 0.20 S24315,39 0.033 0.24
M15617 0.014 0.09 A199 0.006 0.05 T244 0.002 0.90
L15717 0.023 0.02 K21138,40 0.090 0.19 Y247 0.002 0.08
R15817,39 0.002 0.16 N21338 0.080 0.23 R24915,39 0.003 0.02

Accessible solvent area (ASA) of amino acid residues is calculated as a fraction of the extended standard state for a residue in tripeptide Gly-X-Gly.41