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. 2009 Sep 18;18(11):2410–2419. doi: 10.1002/pro.251

Table I.

The 20 Homodimers with the Highest Percentage of Monomer Surface Area Involved in the Dimerization Surface in the Set of Nonredundant PDB Structures

Rank PDB ID Interface surface area (Å2) Percent total surface area (%) Protein Organism
1 1W5U 1490 47.0 Gramicidin D Bacillus brevis
2 1U42 4583 45.9 Mutant of dimerization domain of NF-kB p50 factor Mus musculus
3 1W7R 1165 44.4 Feglymycin Streptomyces
4 2RH0 6167 43.3 NudC domain-containing protein 2 Mus musculus
5 1ZK9 5436 43.1 Dimerization domain of NF-kB RelB Mus musculus
6 3DIE 4290 42.0 Thioredoxin W28A mutant Staphylococcus aureus
7 3FJ5 2814 42.0 C-src-SH3 domain Gallus gallus
8 2B1Y 5499 41.6 ATU1913 Agrobacterium tumefaciens str. C58
9 2I8D 4850 41.2 COG5646 Lactobacillus casei
10 2FDO 3960 41.1 AF2331 Archaeoglobus fulgidus DSM 4304
11 1G8E 3302 40.9 Flagellar transcriptional regulator FlhD Escherichia coli
12 2DLB 3270 40.6 YopT Bacillus subtilis
13 2OPL 6110 40.1 OsmC-like protein Geobacter sulfurreducens
14 1WKQ 4129 39.8 Guanidine deaminase Bacillus subtilis
15 1MYK 1786 39.5 Arc repressor mutant PL8 Enterobacteria phage p22
16 1K9U 2542 39.2 Pollen allergen Phl p 7 Phleum pratense
17 2OTA 2768 39.1 UPF0352 protein CPS_2611 Colwellia psycherythraea 34h
18 3GXZ 4373 39.0 Cyanovirin-n Nostoc ellipsosporum
19 2RFP 5999 38.7 Putative NTP pyrophosphohydrolase Exiguobacterium sibiricum
20 1WZ3 3570 38.7 Plant ATG12 Arabdopsis thaliana