Table I.
The 20 Homodimers with the Highest Percentage of Monomer Surface Area Involved in the Dimerization Surface in the Set of Nonredundant PDB Structures
Rank | PDB ID | Interface surface area (Å2) | Percent total surface area (%) | Protein | Organism |
---|---|---|---|---|---|
1 | 1W5U | 1490 | 47.0 | Gramicidin D | Bacillus brevis |
2 | 1U42 | 4583 | 45.9 | Mutant of dimerization domain of NF-kB p50 factor | Mus musculus |
3 | 1W7R | 1165 | 44.4 | Feglymycin | Streptomyces |
4 | 2RH0 | 6167 | 43.3 | NudC domain-containing protein 2 | Mus musculus |
5 | 1ZK9 | 5436 | 43.1 | Dimerization domain of NF-kB RelB | Mus musculus |
6 | 3DIE | 4290 | 42.0 | Thioredoxin W28A mutant | Staphylococcus aureus |
7 | 3FJ5 | 2814 | 42.0 | C-src-SH3 domain | Gallus gallus |
8 | 2B1Y | 5499 | 41.6 | ATU1913 | Agrobacterium tumefaciens str. C58 |
9 | 2I8D | 4850 | 41.2 | COG5646 | Lactobacillus casei |
10 | 2FDO | 3960 | 41.1 | AF2331 | Archaeoglobus fulgidus DSM 4304 |
11 | 1G8E | 3302 | 40.9 | Flagellar transcriptional regulator FlhD | Escherichia coli |
12 | 2DLB | 3270 | 40.6 | YopT | Bacillus subtilis |
13 | 2OPL | 6110 | 40.1 | OsmC-like protein | Geobacter sulfurreducens |
14 | 1WKQ | 4129 | 39.8 | Guanidine deaminase | Bacillus subtilis |
15 | 1MYK | 1786 | 39.5 | Arc repressor mutant PL8 | Enterobacteria phage p22 |
16 | 1K9U | 2542 | 39.2 | Pollen allergen Phl p 7 | Phleum pratense |
17 | 2OTA | 2768 | 39.1 | UPF0352 protein CPS_2611 | Colwellia psycherythraea 34h |
18 | 3GXZ | 4373 | 39.0 | Cyanovirin-n | Nostoc ellipsosporum |
19 | 2RFP | 5999 | 38.7 | Putative NTP pyrophosphohydrolase | Exiguobacterium sibiricum |
20 | 1WZ3 | 3570 | 38.7 | Plant ATG12 | Arabdopsis thaliana |