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. 2009 Dec 3;10(Suppl 3):S23. doi: 10.1186/1471-2164-10-S3-S23

Figure 2.

Figure 2

A difficult case (PDB ID 1LMB:4) of binding residue prediction, which can be enhanced with the best aligned template of correct predicted protein-DNA binding mode. Residues colored by red means false positive. Residues colored by blue means false negative. Residues colored by green means true positive. (a) Prediction of sequence-specific binding residues. (b) Prediction of non-specific binding residues. (c) Combination of sequence-specific and non-specific binding residues prediction. (d) Enhanced prediction with the best aligned template of correct protein-DNA binding mode prediction.