Table 2.

Performance of the binding site prediction in terms of secondary structure elements

Binding type	Secondary structure elements	# of residues	TP	FP	TN	FP	Sensitivity	Specificity	Precision	Accuracy
Specific	Helix	32670	1322	279	30160	909	59.26%	99.08%	82.57%	96.36%
	Sheet	5259	22	0	5077	160	12.09%	100.00%	100.00%	96.96%
	Coil	22537	420	116	21316	685	38.01%	99.46%	78.36%	96.45%
Non-specific	Helix	32670	2197	1005	27458	2010	52.22%	96.47%	66.61%	90.77%
	Sheet	5259	257	185	4524	293	46.73%	96.07%	58.15%	90.91%
	Coil	22537	2198	1264	17263	1812	54.81%	93.18%	63.49%	86.35%
Specific + Non-specific	Helix	32670	2988	858	26783	2041	59.42%	96.90%	77.69%	91.13%
	Sheet	5259	261	181	4472	345	43.07%	96.11%	59.05%	90.00%
	Coil	22537	2402	1167	17066	1902	55/81%	93.60%	67.305	86.38%