Table 2.
Gene statistics summary. For NBS1, 7 SNPs were genotyped - 4 chosen as tagSNPs and 3 chosen for functional interest.
| Amplicons (bp sequenced) | Missing reads | Missing in both directions | SNPs found by re-sequencing | Coding (non-synonymous) | Singletons | SNPs MAF > 5% | Haplotypes | tagSNPs genotyped | SNPs genotyped | |
|---|---|---|---|---|---|---|---|---|---|---|
| NBS1 | 26 (6042) | 6.4% | 1.8% | 36 | 8 (6) | 14 (39%) | 14 (38.9%) | 21 | 4 | 7 |
| RAD50 | 34 (9031) | 6.4% | 2.6% | 28 | 8 (4) | 17 (61%) | 8 (28.6%) | 9 | 4 | 4 |
| MRE11 | 28 (5999) | 12.3% | 5.9% | 20 | 2 (1) | 11 (55%) | 7 (35%) | 17 | 4 | 4 |
| BLM | 31 (8537) | 25.4% | 12.1% | 30 | 11 (6) | 13 (43%) | 12 (41.4%) | 26 | 4 | 4 |