Table 2.
Completion Rates comparing the Fluidigm platform with standard TaqMan chemistry (CGF)
| Assay | Fluidigm Completion Rate | 95% CI lower | 95% CI upper | N | CGF Completion Rate | 95% CI lower | 95% CI upper | M | Completion rate based on |
|---|---|---|---|---|---|---|---|---|---|
| A-050522 | 97.89 | 97.00 | 98.78 | 995 | 96.95 | 95.88 | 98.02 | 995 | All Samples (N = M = 995) |
| A-050546 | 98.89 | 98.24 | 99.54 | 995 | 98.85 | 98.19 | 99.51 | 995 | All Samples (N = M = 995) |
| A-051020 | 98.89 | 98.24 | 99.54 | 995 | 97.66 | 96.72 | 98.60 | 995 | All Samples (N = M = 995) |
| A-048530 | 98.69 | 97.99 | 99.40 | 995 | 98.96 | 98.33 | 99.59 | 995 | All Samples (N = M = 995) |
| A-051016 | 99.40 | 98.92 | 99.88 | 995 | 98.78 | 98.10 | 99.46 | 995 | All Samples (N = M = 995) |
| A-028526 | 99.70 | 99.36 | 100.00 | 995 | 98.66 | 97.91 | 99.41 | 905 | N = 995 Fluidigm M = 905 CGF (90 HapMap excluded) |
| A-041985 | 98.29 | 97.49 | 99.10 | 995 | 98.22 | 97.36 | 99.08 | 905 | N = 995 Fluidigm M = 905 CGF (90 HapMap excluded) |
| A-051013 | 99.50 | 99.06 | 99.94 | 995 | 98.59 | 97.86 | 99.32 | 995 | All Samples (N = M = 995) |
| A-051017 | 99.40 | 98.92 | 99.88 | 995 | 99.41 | 98.93 | 99.89 | 995 | All Samples (N = M = 995) |
| A-051018 | 99.50 | 99.06 | 99.94 | 995 | 99.32 | 98.81 | 99.83 | 995 | All Samples (N = M = 995) |
| A-029470 | 99.80 | 99.52 | 100.00 | 995 | 98.66 | 97.91 | 99.41 | 905 | N = 995 Fluidigm M = 905 CGF (90 HapMap excluded) |
| A-050521 | 99.70 | 99.36 | 100.00 | 995 | 97.55 | 96.59 | 98.51 | 995 | All Samples (N = M = 995) |
| A-048529 | 99.80 | 99.52 | 100.00 | 995 | 99.25 | 98.71 | 99.79 | 995 | All Samples (N = M = 995) |
| A-041990 | 99.90 | 99.70 | 100.00 | 995 | 99 | 98.35 | 99.65 | 905 | N = 995 Fluidigm M = 905 CGF (90 HapMap excluded) |
| 001_2058 | 99.50 | 99.06 | 99.94 | 995 | 99 | 98.35 | 99.65 | 905 | N = 995 Fluidigm M = 905 CGF (90 HapMap excluded) |
| A-050301 | 99.50 | 99.06 | 99.94 | 995 | 99.28 | 98.75 | 99.81 | 995 | All Samples (N = M = 995) |
| A-051015 | 99.80 | 99.52 | 100.00 | 995 | 99.22 | 98.67 | 99.77 | 995 | All Samples (N = M = 995) |
| A-051019 | 99.50 | 99.06 | 99.94 | 995 | 98.82 | 98.15 | 99.49 | 995 | All Samples (N = M = 995) |
| A-042514 | 99.30 | 98.78 | 99.82 | 995 | 99.65 | 99.28 | 100.00 | 995 | All Samples (N = M = 995) |
| A-051014 | 99.90 | 99.70 | 100.00 | 995 | 99.61 | 99.22 | 100.00 | 995 | All Samples (N = M = 995) |
| A-035643 | 99.60 | 98.29 | 100.00 | 90 | N.D. | N.D | N.D. | N.D. | N = 90 Fluidigm HapMap |
| A-036266 | 99.70 | 98.57 | 100.00 | 90 | N.D. | N.D. | N.D. | N.D. | N = 90 Fluidigm HapMap |
| A-048531 | 100.00 | 100.00 | 100.00 | 90 | 94.59 | 89.92 | 99.26 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050302 | 100.00 | 100.00 | 100.00 | 90 | 87.39 | 80.53 | 94.25 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050526 | 99.90 | 99.24 | 100.00 | 90 | 89.19 | 82.77 | 95.61 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050527 | 100.00 | 100.00 | 100.00 | 90 | 89.19 | 82.77 | 95.61 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050528 | 100.00 | 100.00 | 100.00 | 90 | 90.09 | 83.92 | 96.26 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050532 | 100.00 | 100.00 | 100.00 | 90 | 89.19 | 82.77 | 95.61 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050534 | 100.00 | 100.00 | 100.00 | 90 | 89.19 | 82.77 | 95.61 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050537 | 100.00 | 100.00 | 100.00 | 90 | 90.09 | 83.92 | 96.26 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050540 | 100.00 | 100.00 | 100.00 | 90 | 90.09 | 83.92 | 96.26 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-050541 | 100.00 | 100.00 | 100.00 | 90 | 89.19 | 82.77 | 95.61 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051351 | 100.00 | 100.00 | 100.00 | 90 | 99.1 | 97.15 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051352 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051353 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051354 | 99.80 | 98.87 | 100.00 | 90 | N.D. | N.D. | N.D. | N.D. | N = 90 Fluidigm HapMap |
| A-051355 | 100.00 | 100.00 | 100.00 | 90 | 99.1 | 97.15 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051356 | 100.00 | 100.00 | 100.00 | 90 | 99.1 | 97.15 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051357 | 100.00 | 100.00 | 100.00 | 90 | 99.1 | 97.15 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051358 | 100.00 | 100.00 | 100.00 | 90 | N.D. | N.D. | N.D. | N.D. | N = 90 Fluidigm HapMap |
| A-051359 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051360 | 99.90 | 99.24 | 100.00 | 90 | 97.3 | 93.95 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051361 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051362 | 99.90 | 99.24 | 100.00 | 90 | 99.1 | 97.15 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051363 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051364 | 100.00 | 100.00 | 100.00 | 90 | 98.2 | 95.45 | 100.00 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |
| A-051365 | 100.00 | 100.00 | 100.00 | 90 | 94.59 | 89.92 | 99.26 | 90 | N = 90 Fluidigm HapMap and M = 90 CGF HapMap |