. 2009 Dec 16;4(12):e8319. doi: 10.1371/journal.pone.0008319

Table 6. Alignment of M. tuberculosis IS6110 repeat element and sequence data from SC1 exhibiting complete sequence homology.

M. tuberculosis	`CGTGAGGGCATCGAGGTGGCCAGATGCACCGTCGAACGGCTGATGACCAA`
SC1 concensus	`..................................................`
SC2 concensus	`..................................................`
SC2 concensus	`..................................................`
SC7 concensus	`..................................................`
M.tuberculosis	`ACTCGGCCTGTCCGGGACCACCCGCGGCAAAGCCCGCAGGACCACGATCG`
SC1 concensus	`..................................................`
SC2 concensus	`..................................................`
SC2 concensus	`..................................................`
SC7 concensus	`..................................................`
M.tuberculosis	`CTGATCCGGCCACAGCCCGTCCCGCCGATCTCGTCCAGCGCCGCTTCGGA`
SC1 concensus	`..................................................`
SC2 concensus	`..................................................`
SC2 concensus	`..................................................`
SC7 concensus	`..................................................`
M.tuberculosis	`CCACCAGCACCTAACCGGCTGTGGGTAGCAGACCTCACCTATGTGTCGAC`
SC1 concensus	`..................................................`
SC2 concensus	`..................................................`
SC2 concensus	`..................................................`
SC7 concensus	`..................................................`
M.tuberculosis	`CTGGGCAGGGTTCGCCTACGTGGCCTTTGTCACCGACGCCTACGTCGC`
SC1 concensus	`................................................`
SC2 concensus	`................................................`
SC2 concensus	`................................................`
SC7 concensus	`................................................`

Underlined sequence denotes the primer binding region.

Aligned to the IS6110 sequence from Genbank, accession number X17348.