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. Author manuscript; available in PMC: 2010 Mar 10.
Published in final edited form as: J Chem Theory Comput. 2009 Mar 10;5(3):627–640. doi: 10.1021/ct800397z

Figure 4.

Figure 4

Plots of energy vs rmsd from the native structure for the 1LQ7 protein generated using multiplexed-replica exchange MD simulations with different numbers of replicas. The number of replicas is shown in top-left corner of each graph. The total length of the simulation is the same for all graphs. Different colors from the rainbow spectrum represent different temperatures: red for 300 K, orange for 350 K, green for 400 K, cyan for 500 K, blue for 600 K, and magenta for 700 K.