Skip to main content
. 2009 Dec 11;85(6):847–861. doi: 10.1016/j.ajhg.2009.11.004

Figure 4.

Figure 4

Genotype Discordance and Missing-Data Rates at SNPs with > 3% Missing CHIAMO Genotypes

Discordance and missing-data rates are given for CHIAMO and BEAGLE Affymetrix 500K chip genotype calls for the subset of SNPs with > 3% missing CHIAMO genotypes. Discordance rates are computed with the use of high-confidence (genotype probability > 0.999995) BEAGLE Illumina 550K chip genotype calls. The unfilled triangle, filled square, and filled triangle identify the discordance and missing-data rates corresponding to calling thresholds of 0.9, 0.95, and 0.99 posterior genotype probability.