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. 2009 Dec 11;85(6):862–872. doi: 10.1016/j.ajhg.2009.11.001

Table 5.

Type I Error Rates (×104) of Association Tests at the Nominal Significance Level of 10−4 When Different Proportions of the Controls with Potential Genotyping Errors Are Excluded

No. of Controls Proportion Excluded MAF = 0.05 MAF = 0.1
96 0 0.81 0.90
1/2 1.26 1.13
1 2.84 1.89
192 0 0.81 0.92
1/2 2.39 1.77
1 13.2 6.18
384 0 0.74 0.81
1/2 7.99 4.34
1 145.0 44.1

MAF denotes minor allele frequency.