Table 3.
SNPs that Are Highly Differentiated between the NHC and the SHC
| SNP | FST | Raw p Value | FDR p Value | Chr. | Position | Gene | MIM Number | Category |
|---|---|---|---|---|---|---|---|---|
| rs174570 | 0.066 | 2.40 × 10−13 | 4.61 × 10−7 | 11 | 61353788 | FADS2 | 606149 | intron |
| rs2596472 | 0.063 | 7.37 × 10−13 | 7.09 × 10−7 | 6 | 31536946 | HCP5 | 604676 | nearGene-5 |
| rs2517646 | 0.055 | 2.00 × 10−11 | 1.29 × 10−5 | 6 | 30230554 | TRIM10 | 605701 | intron |
| rs174534 | 0.054 | 2.82 × 10−11 | 1.36 × 10−5 | 11 | 61306034 | C11orf9 | 608329 | intron |
| rs1265048 | 0.052 | 6.64 × 10−11 | 2.56 × 10−5 | 6 | 31189388 | PSORS1C1 | N/A | nearGene-5 |
| rs5063 | 0.050 | 1.65 × 10−10 | 5.28 × 10−5 | 1 | 11830235 | NPPA | 108780 | missense |
| rs9266629 | 0.050 | 2.11 × 10−10 | 5.80 × 10−5 | 6 | 31454801 | N/A | N/A | N/A |
| rs1419675 | 0.048 | 3.56 × 10−10 | 8.56 × 10−5 | 6 | 30200686 | N/A | N/A | N/A |
| rs198464 | 0.048 | 4.61 × 10−10 | 9.85 × 10−5 | 11 | 61278197 | C11orf9 | 608329 | nearGene-5 |
| rs9405015 | 0.045 | 1.69 × 10−9 | 3.26 × 10−4 | 6 | 31263782 | N/A | N/A | N/A |
| rs4626416 | 0.043 | 3.86 × 10−9 | 6.59 × 10−4 | 6 | 23243905 | N/A | N/A | N/A |
| rs2253907 | 0.042 | 4.11 × 10−9 | 6.59 × 10−4 | 6 | 31444849 | N/A | N/A | N/A |
| rs2076003 | 0.041 | 7.48 × 10−9 | 1.11 × 10−3 | 1 | 11806734 | CLCN6 | 602726 | intron |
| rs7537765 | 0.041 | 8.63 × 10−9 | 1.19 × 10−3 | 1 | 11809890 | CLCN6 | 602726 | intron |
| rs1264704 | 0.041 | 9.34 × 10−9 | 1.20 × 10−3 | 6 | 30173298 | N/A | N/A | N/A |
| rs17367504 | 0.040 | 1.07 × 10−8 | 1.29 × 10−3 | 1 | 11785365 | MTHFR | 607093 | intron |
| rs2236797 | 0.040 | 1.24 × 10−8 | 1.40 × 10−3 | 1 | 11815237 | CLCN6 | 602726 | intron |
| rs9295676 | 0.040 | 1.39 × 10−8 | 1.49 × 10−3 | 6 | 26036355 | SLC17A2 | 611049 | intron |
Abbreviations are as follows: FDR, p values are corrected by Benjamini and Hochberg step-up false discovery rate control; Chr., chromosome; MIM, Mendelian Inheritance in Man; N/A, not available.