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. 2009 Sep 9;37(21):e140. doi: 10.1093/nar/gkp732

Table 1.

Assignments of oligonucleotide fragments found in the RNase digest of the yeast tRNAPhe-1 preparation

Peak number Observed
Theoretical
Δppm tRNAa Residue numbersa Sequencea
m/z Charge Molecular mass Molecular mass
1 649.0779 −1 650.0858 650.0882 3.7 Phe1, Phe2 2–3 CG>p
2 960.1170 −1 961.1249 961.1284 3.6 Phe1, Phe2 16–18 DDG>p
3 650.0623 −1 651.0702 651.0722 3.1 Phe1, Phe2 52–53 UG>p
4 590.1003 −2 1182.2164 1182.2195 2.6 Phe1, Phe2 72–75 CACC-OH
5 673.0939 −1 674.1018 674.0995 −3.4 Phe1, Phe2 44–45 AG>p
6 794.0939 −2 1590.2036 1590.2065 1.8 Phe1, Phe2 11–15 CΨCAG>p
7 637.0674 −2 1276.1506 1276.1538 2.5 Phe1, Phe2 54–57 TΨCG>p
8 754.6255 −2 1511.2668 1511.2718 3.3 Phe1, Phe2 72–76 CACCA-OH
9 649.0736 −2 1300.1630 1300.1651 1.6 Lys2 7–10 UUAm2G>p
10 969.1186 −2 1940.2530 1940.2576 2.4 Phe1, Phe2 46–51 m7GUCm5CUG>p
11 980.1395 −2 1962.2948 1962.3009 3.1 Phe1, Phe2 25–30 Cm2,2GCCAG>p
12 1282.6711 −2 2567.3580 2567.3677 3.8 Phe1, Phe2 58–65 m1AUCCACAG>p
13 966.1183 −2 1934.2524 1934.2584 3.1 Phe2 5–10 ACUUAm2G>p
14 966.6118 −2 1935.2394 1935.2424 1.6 Phe1 5–10 AUUUAm2G>p
14 959.1121 −2 1920.2400 1920.2428 1.5 Phe1 66–71 AAUUCG>p
15 1463.6897 −2 2929.3952 2929.4075 4.2 Tyr 37–45 ΨA(i6A)AΨCUUG>p
16 1381.2057 −3 4146.6408 4146.6543 3.3 Phe1, Phe2 31–42 ACmUGmAAyWAΨm5CUG>p

aAccording to the MODMICS database27 (http://genesilico.pl/modomics).

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