Table 1.
Assignments of oligonucleotide fragments found in the RNase digest of the yeast tRNAPhe-1 preparation
Peak number | Observed |
Theoretical |
Δppm | tRNAa | Residue numbersa | Sequencea | ||
---|---|---|---|---|---|---|---|---|
m/z | Charge | Molecular mass | Molecular mass | |||||
1 | 649.0779 | −1 | 650.0858 | 650.0882 | 3.7 | Phe1, Phe2 | 2–3 | CG>p |
2 | 960.1170 | −1 | 961.1249 | 961.1284 | 3.6 | Phe1, Phe2 | 16–18 | DDG>p |
3 | 650.0623 | −1 | 651.0702 | 651.0722 | 3.1 | Phe1, Phe2 | 52–53 | UG>p |
4 | 590.1003 | −2 | 1182.2164 | 1182.2195 | 2.6 | Phe1, Phe2 | 72–75 | CACC-OH |
5 | 673.0939 | −1 | 674.1018 | 674.0995 | −3.4 | Phe1, Phe2 | 44–45 | AG>p |
6 | 794.0939 | −2 | 1590.2036 | 1590.2065 | 1.8 | Phe1, Phe2 | 11–15 | CΨCAG>p |
7 | 637.0674 | −2 | 1276.1506 | 1276.1538 | 2.5 | Phe1, Phe2 | 54–57 | TΨCG>p |
8 | 754.6255 | −2 | 1511.2668 | 1511.2718 | 3.3 | Phe1, Phe2 | 72–76 | CACCA-OH |
9 | 649.0736 | −2 | 1300.1630 | 1300.1651 | 1.6 | Lys2 | 7–10 | UUAm2G>p |
10 | 969.1186 | −2 | 1940.2530 | 1940.2576 | 2.4 | Phe1, Phe2 | 46–51 | m7GUCm5CUG>p |
11 | 980.1395 | −2 | 1962.2948 | 1962.3009 | 3.1 | Phe1, Phe2 | 25–30 | Cm2,2GCCAG>p |
12 | 1282.6711 | −2 | 2567.3580 | 2567.3677 | 3.8 | Phe1, Phe2 | 58–65 | m1AUCCACAG>p |
13 | 966.1183 | −2 | 1934.2524 | 1934.2584 | 3.1 | Phe2 | 5–10 | ACUUAm2G>p |
14 | 966.6118 | −2 | 1935.2394 | 1935.2424 | 1.6 | Phe1 | 5–10 | AUUUAm2G>p |
14 | 959.1121 | −2 | 1920.2400 | 1920.2428 | 1.5 | Phe1 | 66–71 | AAUUCG>p |
15 | 1463.6897 | −2 | 2929.3952 | 2929.4075 | 4.2 | Tyr | 37–45 | ΨA(i6A)AΨCUUG>p |
16 | 1381.2057 | −3 | 4146.6408 | 4146.6543 | 3.3 | Phe1, Phe2 | 31–42 | ACmUGmAAyWAΨm5CUG>p |
aAccording to the MODMICS database27 (http://genesilico.pl/modomics).