. 2009 Oct 8;61(1):165–177. doi: 10.1093/jxb/erp296

Table 2.

Known miRNAs present in hypoxia treated and control roots

miRNA family	miRNA	Sequence	Untreated reads	Hypoxia reads	Relative change^a
156	156a,b,c,d,e,f	UGACAGAAGAGAGUGAGCAC	4 382	6 958	1.35*
	156g	CGACAGAAGAGAGUGAGCAC	17	55	2.75*
	156h	UGACAGAAGAAAGAGAGCAC	2	5	2.13
157	157a,b,c	UUGACAGAAGAUAGAGAGCAC	4 119	8 409	1.74*
	157d	UGACAGAAGAUAGAGAGCAC	58	282	4.14*
158	158a	UCCCAAAUGUAGACAAAGCA	2 427	7 981	2.80*
	158b	CCCCAAAUGUAGACAAAGCA	34	69	1.73*
159	159a	UUUGGAUUGAAGGGAGCUCUA	73	162	1.89*
	159b	UUUGGAUUGAAGGGAGCUCUU	11	14	1.08
160	160a,b,c	UGCCUGGCUCCCUGUAUGCCA	1	2	1.70
161	161.1	UGAAAGUGACUACAUCGGGGU	39	65	1.42*
	161.2	UCAAUGCAUUGAAAGUGACUA	20	119	5.06*
163	163	UUGAAGAGGACUUGGAACUUCGAU	2	4	1.70
164	164a,b	UGGAGAAGCAGGGCACGUGCA	2 362	3 151	1.13*
	164c	UGGAGAAGCAGGGCACGUGCG	452	550	1.04
165	165a,b	UCGGACCAGGCUUCAUCCCCC	14 977	15 750	0.89*
166	166a,b,c,d,e,f,g	UCGGACCAGGCUUCAUUCCCC	79 589	84 844	0.91*
167	167a,b	UGAAGCUGCCAGCAUGAUCUA	1 429	1 709	1.02
	167d	UGAAGCUGCCAGCAUGAUCUGG	1	4	3.40*
168	168a,b	UCGCUUGGUGCAGGUCGGGAA	7 584	9 932	1.11*
169	169a	CAGCCAAGGAUGACUUGCCGA	10	3	0.26*
	169b,c	CAGCCAAGGAUGACUUGCCGG	1	8	6.80*
	169d,e,f,g	UGAGCCAAGGAUGACUUGCCG	92	61	0.56*
	169h,i,j,k,l,m,n	UAGCCAAGGAUGACUUGCCUG	3	6	1.70
171	171a	UGAUUGAGCCGCGCCAAUAUC	0	2	NA**
172	172a, b	AGAAUCUUGAUGAUGCUGCAU	15	93	5.27*
	172c,d	AGAAUCUUGAUGAUGCUGCAG	2	2	0.85
	172e	GGAAUCUUGAUGAUGCUGCAU	4	2	0.43
173	173	UUCGCUUGCAGAGAGAAAUCAC	213	375	1.50*
319	319a,b	UUGGACUGAAGGGAGCUCCCU	1	0	NA
390	390a,b	AAGCUCAGGAGGGAUAGCGCC	1 652	3 124	1.61*
391	391	UUCGCAGGAGAGAUAGCGCCA	25	77	2.62*
395	395a,d,e	CUGAAGUGUUUGGGGGAACUC	1	2	1.70
	395b,c,f	CUGAAGUGUUUGGGGGGACUC	2	5	2.13
399	399a	UGCCAAAGGAGAUUUGCCCUG	1	1	0.85
	399b,c	UGCCAAAGGAGAGUUGCCCUG	4	3	0.64
	399d	UGCCAAAGGAGAUUUGCCCCG	5	1	0.17
	399f	UGCCAAAGGAGAUUUGCCCGG	11	12	0.93
400	400	UAUGAGAGUAUUAUAAGUCAC	2	1	0.43
403	403	UUAGAUUCACGCACAAACUCG	2	4	1.70
408	408	AUGCACUGCCUCUUCCCUGGC	125	138	0.94
447	447a,b	UUGGGGACGAGAUGUUUUGUUG	5	3	0.51
775	775	UUCGAUGUCUAGCAGUGCCA	9	27	2.55*
780	780.1	UCUAGCAGCUGUUGAGCAGGU	0	1	NA
822	822	UGCGGGAAGCAUUUGCACAUG	115	121	0.89
823	823	UGGGUGGUGAUCAUAUAAGAU	6	10	1.42
824	824	UAGACCAUUUGUGAGAAGGGA	20	39	1.66*
827	827	UUAGAUGACCAUCAACAAACU	10	20	1.70
829	829.1	AGCUCUGAUACCAAAUGAUGGAAU	1 564	1 228	0.67*
	829.2	CAAAUUAAAGCUUCAAGGUAG	1	0	NA
830	830	UAACUAUUUUGAGAAGAAGUG	1	0	NA
837	837-3p	AAACGAACAAAAAACUGAUGG	14	27	1.64*
	837-5p	AUCAGUUUCUUGUUCGUUUCA	1	1	0.85
838	838	UUUUCUUCUACUUCUUGCACA	0	1	NA
841	841	UACGAGCCACUUGAAACUGAA	1	0	NA
842	842	UCAUGGUCAGAUCCGUCAUCC	23	24	0.89
843	843	UUUAGGUCGAGCUUCAUUGGA	0	2	NA
846	846	UUGAAUUGAAGUGCUUGAAUU	3	3	0.85
848	848	UGACAUGGGACUGCCUAAGCUA	10	14	1.19
852	852	AAGAUAAGCGCCUUAGUUCUG	1	2	1.70
860	860	UCAAUAGAUUGGACUAUGUAU	0	2	NA
861	861-5p	CCUUGGAGAAAUAUGCGUCAA	1	0	NA
862	862-5p	UCCAAUAGGUCGAGCAUGUGC	0	3	NA
869	869.2	UCUGGUGUUGAGAUAGUUGAC	50	57	0.97
1888	1888	UAAGUUAAGAUUUGUGAAGAA	0	2	NA

Relative change is the ratio of hypoxia-treated sample to the control and takes into account the differences in total read between samples. *P value ≤0.01. **Relative change was not calculated as they contained 0 reads in one sample.