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. 2009 Dec 21;4(12):e8361. doi: 10.1371/journal.pone.0008361

Table 1. Comparison of plasmid sequence to Genbank using blastP, or blastX for frameshifts and fragments.

Location on pRPR Top blast hit
RPR_p01 Rickettsia felis RF_p23 Plasmid stability protein ParA2, E = 2e−92, Positives = 194/211 (91%) Not found in other rickettsiae.
RPR_p02 Rickettsia felis RF_p22 Hypothetical protein, E = 3e−25, Positives = 69/82 (84%)
RPR_p03 Rickettsia felis RF_p21 Hypothetical protein, E = 3e−29, Positives = 90/130 (69%)
RPR_p04 Rickettsia massiliae RMA_p01 DnaA-like replication initiator protein E = 2e−123, Positives = 435/798 (54%)
5154..6508 Rickettsia bellii RBE_0057 Type I restriction-modification system methyltransferase subunit, pseudogene E = 0.0, Positives = 392/450 (87%)
RPR_p05 Rickettsia massiliae RMA_0538 Transposase, E = 0.0, Positives = 360/364 (98%)
RPR_p06 Pseudomonas aeruginosa PA2G_00065 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, E = 6e-72, Positives = 165/205 (80%)
RPR_p07 Pseudomonas aeruginosa PA2G_00064 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, E = 3e−164, Positives = 315/375 (84%)
RPR_p08 Pseudomonas aeruginosa PaerPA_01001561 (PA2G_00062) FabG, 3-ketoacyl-(acyl-carrier-protein) reductase, E = 6e−101, Positives = 221/255 (86%)
RPR_p09 Pseudomonas aeruginosa PA2G_00061 FabH, 3-oxoacyl-[acyl-carrier-protein], E = 3e−158, Positives = 291/319 (91%)
RPR_p10 Pseudomonas aeruginosa PA2G_00060 Acyl carrier protein, E = 1e−25, Positives = 65/72 (90%)
RPR_p11 Candidatus Amoebophilus asiaticus Aasi_0982 ABC-type transport system, ATPase and permease components, E = 0.0, Positives = 442/575 (76%)
14357..15476 Rickettsia massiliae RMA_0746 Transposase, pseudogene E = 3e−140, Positives = 257/272 (94%) Not found in other rickettsiae.
RPR_p12 Rickettsia monacensis RM-p7 Hsp1, Molecular chaperone (small heat shock protein), E = 1e−56, Positives = 139/176 (78%)
RPR_p13 Rickettsia monacensis RM-p6 Hsp2, Molecular chaperone (small heat shock protein), E = 1e−73, Positives = 146/154 (94%)
RPR_p14 Orientia tsutsugamushi OTT_1892 Transposase-like, E = 5e−104, Positives = 241/303 (79%)
RPR_p15 Rickettsia massiliae RMA_0538 Transposase, E = 0.0, Positives = 358/364 (98%)
19828..20073 Wolbachia WD_0253 Transposase fragment, E = 1e−27, Positives = 66/77 (85%)
20088..21168 Rickettsia felis RF_p41 Transposase, pseudogene E = 3e−164, Positives = 330/356 (93%)
RPR_p16 Erwinia tasmaniensis ETA_pET460420 Putative lipoprotein, E = 2e−13, Positives = 67/121 (55%)
RPR_p17 Rickettsia bellii RBE_0152 SMR-type multi-drug efflux transporter, E = 2e−41, Positives = 94/103 (91%) Not found in other Rickettsiae.
RPR_p18 Methanosarcina barkeri Mbar_A2604 TPR repeat-containing protein, E = 8e−13, Positives = 64/116 (55%)
RPR_p19 First half of protein is fragment of Rickettsia conorii protein PS 120 (Sca4) E = 2e−68, Positives = 164/223 (73%). Second half of protein yields no homologies. Apparent chimeric protein.
RPR_p20 Rickettsia akari A1C_03990 hypothetical protein, partial homology, E = 8e−92, Positives = 228/323 (70%)