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. Author manuscript; available in PMC: 2009 Dec 14.
Published in final edited form as: Biopolymers. 2009;92(6):573–595. doi: 10.1002/bip.21316

Table VI.

Computational Estimates of Latent Amino Acid Side-Chain Hydrophilicity/Hydrophobicity

Credible Region
Meana sddev var 2.50% median 97.50%
Intercept

alpha[1] −1.318 0.4187 1.74E02 −2.231 −1.293 −0.5699
alpha[2] −1.171 0.3878 1.61E02 −1.938 −1.163 −0.4337
alpha[3] −1.171 0.3766 1.57E02 −1.924 −1.164 −0.4622
alpha[4] −1.147 0.3681 1.49E02 −1.87 −1.141 −0.4346
alpha[5] −1.279 0.3745 1.57E02 −2.053 −1.265 −0.5887

Slope

beta[1] 0.4338 0.009797 2.10E04 0.4148 0.4337 0.4536
beta[2] 0.3733 0.009241 2.02E04 0.3551 0.3733 0.3916
beta[3] 0.3416 0.008948 1.98E04 0.3242 0.3415 0.3594
beta[4] 0.2557 0.008646 1.94E04 0.2386 0.2558 0.2729
beta[5] 0.2379 0.008586 2.10E04 0.2214 0.2378 0.2549

Hydrophobicity

x[1](Trp) 100 0 5.00E13 100 100 100
x[2](Phe) 90.17 2.185 3.23E02 86.01 90.11 94.6
x[3](Leu) 73.84 2.046 3.01E02 69.91 73.81 77.96
x[4] (Ile) 69.53 1.995 3.02E02 65.67 69.52 73.55
x[5](Met) 51.64 1.891 3.10E02 47.99 51.62 55.43
x[6] (Tyr) 47.49 1.865 3.24E 02 43.83 47.49 51.16
x[7] (Val) 44.6 1.854 3.26E02 40.97 44.6 48.25
x[8](Pro) 27.54 1.812 3.53E02 24.01 27.53 31.16
x[9](Cys) 26.84 1.806 3.68E02 23.35 26.84 30.41
x[10](Ala) 13.26 1.837 4.18E02 9.671 13.26 16.84
x[11](Glu) 11.12 1.849 4.36E02 7.513 11.12 14.75
x[12](Thr) 11.64 1.845 4.39E02 7.996 11.65 15.25
x[13](Arg) 10.24 1.851 4.38E02 6.65 10.23 13.87
x[14](Asp) 8.146 1.853 4.40E02 4.518 8.15 11.79
x[15](Gln) 5.996 1.834 4.40E02 2.452 5.998 9.619
x[16](Gly) 3.798 1.599 3.70E02 1.233 3.662 7.277
x[17] (His) 4.143 1.669 3.99E02 1.331 4.048 7.704
x[18](Ser) 3.526 1.538 3.54E02 1.167 3.36 6.907
x[19](Lys) 2.917 1.343 2.80E02 1.091 2.69 6.062
x[20](Asn) 1 0 5.00E13 1 1 1
a

Mean estimates taken as latent coefficients