Table 5. Francisella genotypes in this study.

Genotype	F.1	Ftind 43	T/N.1	T.1	Ftind 44	N.1	N.2	N.3	Ftind 18a	M.2	Ftind 45	A.2	Ftind 46	A.3	A.4	A.5	A.6	Ftind 47	B.15	Ftind 48	B.16	Ftind 38a	B.17	Ftind 49	B.18	Ftind 33	B.19	B.20	B.21	B.22	B.23	Ftind 50	B.24	B.25
1. P.ATCC25017	T b	DEL c	G	T	NDd	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND	ND
2. N.U112	T	INe	A	T	DEL	T	G	C	IN	A	IN	C	IN	T	C	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
3. N.FSC156	T	IN	A	T	DEL	G	A	C	IN	A	IN	C	IN	T	C	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
4. N.FSC454	T	IN	A	T	ND	G	G	T	IN	A	ND	C	ND	T	C	T	C	IN	A	IN	ND	ND	G	ND	C	ND	ND	A	G	G	G	ND	T	T
5. N.Ftind44/ [1], [2], [3]	T	IN	A	T	DEL	G	G	C	IN	A	IN	C	IN	T	C	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
6. M.FSC147	T	IN	A	C	IN	G	G	C	DEL	G	IN	C	IN	T	C	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
7. A1.3/ [4], [5]	T	IN	A	C	IN	G	G	C	IN	A	DEL	A	DEL	C	C	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
8. A1.FSC033	T	IN	A	C	IN	G	G	C	IN	A	DEL	A	DEL	C	T	T	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
9. A1.SCHUS4	T	IN	A	C	IN	G	G	C	IN	A	DEL	A	DEL	C	C	C	C	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
10. A2.1/2	T	IN	A	C	IN	G	G	C	IN	A	DEL	A	IN	T	C	T	T	IN	A	IN	G	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
11. B5.FSC022	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	IN	T	IN	G	IN	C	IN	C	A	G	G	G	IN	T	C
12. B2.OSU18	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	DEL	T	IN	C	IN	C	A	G	G	G	IN	T	C
13. B4.Ftind49/18	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	DEL	C	IN	C	A	G	G	G	IN	T	C
14. B4.FTNF002-00	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	DEL	T	IN	C	A	G	G	G	IN	T	C
15. B3.19/ [20], [23]	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	A	G	G	G	IN	T	C
16. B3.23/ [24], [25]	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	A	G	G	T	IN	T	C
17. B3.LVS	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	A	G	G	T	DEL	G	C
18. B3.RC530	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	A	G	G	T	IN	T	T
19. B1.20/21	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	G	G	G	G	IN	T	C
20. B1.21/22	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	G	A	G	G	IN	T	C
21. B1.FSC200	T	IN	A	C	IN	G	G	C	IN	A	IN	C	IN	T	C	T	C	DEL	G	DEL	G	IN	G	IN	C	DEL	A	G	A	A	G	IN	T	C

^aFtind18, Ftind33 and Ftind38 were previously used in [24].

^bA boldfaced marker corresponds to a phylogenetically determining (canonical) marker for a specific genetic subclade.

^cDEL = derived deletion.

^dND = not detected.

^eIN = ancestral state.