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. 2009 Dec 16;97(12):3139–3149. doi: 10.1016/j.bpj.2009.09.035

Figure 1.

Figure 1

RMSD (heavy atoms) of sampled conformations of complex, peptide, and RNA from the native structure (Protein Data Bank: 1A4T) versus simulation time. (A) RMSD of the N-peptide-boxB RNA complex (black), RNA in complex (red), and peptide in complex (green/light gray) starting from the experimental structure. (B) RMSD of isolated RNA (red/dark gray) and isolated peptide (green/light gray) starting from the experimental structure.