TABLE 2.
Comparison of deduced proteins of phiL7 with those of X. oryzae phages and other best-matched ORFsa
| phiL7 gene, aa length | Comparison (gene, % identity, aa length) with gene from phage: |
Best match ORF other than that from X. oryzae pv. oryzae phages | ||
|---|---|---|---|---|
| Xop411 | Xp10 | OP1 | ||
| p01, 72 | — | — | — | — |
| p02, 101 | p02, 70, 60 | 2R, 75, 60 | ORF2, 72, 62 | — |
| p03, 563 | p06, 72, 555 | 6R, 73, 555 | ORF4, 70, 556 | Z1803 in E. coli O157:H7 EDL933 prophage CP-933N (53% identity, gi 15801274) |
| p04, 430 | p07, 63, 415 | 7R, 64, 415 | ORF5, 64, 415 | HK97 family phage protein, Daci_1632 in Delftia acidovorans SPH-1 (53% identity, gi 160897079) |
| p05, 245 | p08, 53, 241 | 8R, 53, 242 | ORF6, 53, 241 | ESA_01027 in Enterobacter sakazakii ATCC BAA-894 (50% identity, gi 156933216) |
| p06, 394 | p09, 57, 389 | 9R, 58, 389 | ORF7, 58, 389 | HK97 family phage protein, TM1040_1668 in Silicibacter sp. strain TM1040 (56% identity, 99081509) |
| p07, 173 | p17, 46, 156 | 17R, 48, 156 | ORF31, 45, 154 | YE2335 in Yersinia enterocolitica subsp. enterocolitica 8081 (44% identity, gi 123442580) |
| p55.1, 46, 154 | 51L, 48, 154 | ORF58, 47, 157 | ||
| 59L, 46, 155 | ||||
| p08, 113 | p10, 51, 114 | 10R, 50, 114 | ORF8, 49, 114 | gp7 in Burkholderia thailandensis E264 (49% identity, gi 83718052) |
| p09, 124 | p11, 54, 123 | 11R, 55, 123 | ORF9, 55, 123 | Aave_1775 in Acidovorax avenae subsp. citrulli AAC00-1 phage (36% identity, gi 120610456) |
| p10, 155 | p12, 41, 108 | 12R, 41, 108 | ORF10, 46, 139 | Phage protein, BAV1467 in Bordetella avium 197N (33% identity, gi 115422554) |
| p11, 117 | p13, 58, 117 | 13R, 60, 117 | ORF11, 61, 117 | Phage protein, BAV1468 in Bordetella avium 197N (31% identity, gi 115422555) |
| p12, 214 | p14, 41, 212 | 14R, 41, 212 | ORF12, 41, 212 | BP3369 in Bordetella pertussis Tohama I (41% identity, gi 33594257) |
| p13, 100 | p15, 66, 99 | 15R, 69, 98 | ORF13, 72, 98 | — |
| p14, 57 | p16, 56, 53 | 16R, 56, 53 | ORF14, 56, 55 | — |
| p15, 503 | — | — | ORF16, 55, 511 | Hypothetical protein VIP0039 in Salmonella phage E1 (38% identity, gi 6128891) |
| p16, 973 | p18, 49, 1024 | 18R, 49, 1024 | ORF17, 49, 1024 | Phage lambda family protein, SSKA14_183 in Stenotrophomonas sp. strain SKA14 (32% identity, gi 219718652) |
| p17, 119 | p19, 55, 118 | 19R, 55, 118 | ORF18, 55, 118 | gp20 in Xanthomonas campestris pv. pelargonii phage Xp15 (46% identity, gi 66392069), p19 in Stenotrophomonas sp. strain SKA14 (39% identity, gi 219721674) |
| p18, 153 | p20, 58, 152 | 20R, 59, 152 | ORF19, 59, 152 | p20 in Stenotrophomonas sp. strain SKA14 (51% identity, gi 219719979), gp21 in Xanthomonas campestris pv. pelargonii phage Xp15 (35% identity, gi 66392125) |
| p19, 106 | p21, 70, 106 | 21R, 70, 106 | ORF20, 71, 106 | p21 in Stenotrophomonas sp. strain SKA14 (51% identity, gi 219720634) gp22 in Xanthomonas campestris pv. pelargonii phage Xp15 (45% identity, gi 66392070) |
| p20, 1475 | p22, 46, 1610 | 22R, 47, 1604 | ORF21, 47, 1614 | p22 in Stenotrophomonas sp. strain SKA14 (44% identity, gi 219720177), gp23 in Xanthomonas campestris pv. pelargonii phage Xp15 (40% identity, gi 66392071) |
| p21, 166 | — | — | — | — |
| p22, 99 | p23, 37, 101 | 23R, 36, 104 | ORF22, 36, 101 | BMULJ_04619 in Burkholderia multivorans ATCC 17616 (34% identity, gi 189353378) |
| p23, 227 | p24, 29, 240 | 24R, 28, 232 | ORF23, 27, 234 | RSMK01629 in Ralstonia solanacearum MolK2 (30% identity, gi 207724110) |
| p24, 123 | p25, 74, 123 | 25R, 72, 122 | ORF24, 76, 123 | — |
| p25, 85 | — | — | — | — |
| p26, 54 | — | — | — | — |
| p27, 72 | — | — | — | — |
| p28, 174 | p28, 77, 162 | 28R, 75, 162 | ORF27, 78, 157 | gp19 in Enterobacteria phage ST104 (44% identity, gi 46358689), RSB1_gp43 in Ralstonia solanacearum phage RSB1 (38% identity, gi 197935896) |
| p29, 105 | p29, 45, 81 | 29R, 49, 81 | ORF28, 45, 81 | — |
| P29.1, 100 | Rz1, 56, 100 | Rz1, 55, 100 | Rz1, 62, 100 | — |
| p30, 62 | — | — | — | — |
| p31, 105 | — | — | — | — |
| p32, 176 | — | — | — | Hypothetical protein SSKA14_4204 in Stenotrophomonas sp. strain SKA14 (60% identity, gi 219722655) |
| p33, 83 | — | — | — | — |
| p34, 72 | — | — | — | — |
| p35, 804 | p32, 46, 804 | 32R, 47, 804 | ORF33, 47, 801 | RSB1_gp26 in Ralstonia solanacearum phage RSB1 (45% identity, gi 197935879) |
| p36, 204 | — | — | — | — |
| p37, 140 | p33, 50, 101 | 33L, 50, 101 | ORF34, 50, 101 | BBta_6571 in Bradyrhizobium sp. strain BTAi1 (50% identity, gi 148257797) |
| p38, 133 | — | — | — | — |
| p39, 282 | p35, 72, 247 | 34L, 72, 247 | ORF36, 70, 282 | 34L in Burkholderia pseudomallei 1710b (47% identity, gi 76580361), RSB1_gp22 in Ralstonia solanacearum phage RSB1 (43% identity, gi 197935875) |
| p40, 131 | p36, 51, 107 | 35L, 51, 107 | ORF37, 51, 107 | gp33 in Pseudomonas phage LKA1 (42% identity, gi 158345167), RSB1_gp21 in Ralstonia solanacearum phage RSB1 (48% identity, gi 197935874) |
| p41, 309 | p37, 43, 291 | 36L, 43, 291 | ORF38, 44, 291 | Bpse17_22231 in Burkholderia pseudomallei 1710a (45% identity, gi 161372315), RSB1_gp20 in Ralstonia solanacearum phage RSB1 (46% identity, gi 197935873) |
| p42, 56 | — | — | — | — |
| p43, 215 | p38, 34, 177 | 37L, 33, 129 | ORF39, 34, 176 | 37L in Burkholderia thailandensis MSMB43 (40% identity, gi 167841477), RSB1_gp19 in Ralstonia solanacearum phage RSB1 (29% identity, gi 197935872) |
| p44, 330 | p39, 47, 319 | 38L, 47, 319 | ORF40, 47, 319 | 38L in Burkholderia pseudomallei 91 (52% identity, gi 167821768) |
| RSB1_gp18 in Ralstonia solanacearum phage RSB1 (53% identity, gi 197935871) | ||||
| p45, 176 | — | — | — | PfWMP3_13 in Leptolyngbya foveolarum phage Pf-WMP3 (46% identity, gi 148747812) |
| p46, 478 | p39, 42, 478 | 38L, 42, 478 | ORF40, 42, 478 | DNA polymerase gp18 in Ralstonia solanacearum phage RSB1(49% identity, gi 197935871) |
| p47, 433 | p41, 37, 360 | 40L, 35, 257 | ORF41, 35, 428 | Replicative DNA helicase gp17 in Ralstonia solanacearum phage RSB1 (39% identity, gi |
| 39L, 41, 103 | 197935870) | |||
| p48, 279 | p42, 43, 262 | 41L, 44, 249 | ORF42, 43, 262 | Putative DNA primase gp16 in Ralstonia solanacearum phage RSB1 (43% identity, gi 197935869) |
| p49, 123 | p17, 38, 112 | 3R, 41, 113 | ORF31, 38, 112 | Daci_3200 in Delftia acidovorans SPH-1 (36% identity, gi 160898641) |
| p31.1, 46, 96 | 17R, 43, 115 | ORF58, 37, 113 | ||
| p42.1, 36, 112 | 49L, 40, 111 | |||
| p55.1, 41, 111 | 57R, 41, 106 | |||
| p57.1, 40, 90 | ||||
| p50, 203 | — | — | — | — |
| p51, 82 | — | — | — | — |
| p52, 76 | — | — | — | — |
| p53, 123 | p45, 38, 95 | 44L, 41, 82 | ORF45, 41, 82 | — |
| p54, 54 | — | — | — | — |
| p55, 98 | — | — | — | — |
| p56, 204 | p17, 43, 155 | 3R, 47, 121 | ORF31, 50, 154 | BB2226 in Bordetella bronchiseptica RB50 (41% identity, gi 33601210) |
| p31.1, 45, 153 | 17R, 46, 156 | ORF58, 44, 155 | ||
| p42.1, 45, 155 | 49L, 45, 154 | |||
| p55.1, 45, 154 | 57R, 44, 154 | |||
| p57, 100 | — | — | — | — |
| p58, 114 | p60, 46, 100 | 59R, 43, 100 | ORF59, 44, 103 | Mpe_A0538 in Methylibium petroleiphilum PM1 (48% identity, gi 124265731) |
a
—, no corresponding or similar ORF.