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. 2009 Oct 20;37(22):7728–7740. doi: 10.1093/nar/gkp862

Table 1.

Selection of chemically synthesized 5-fluoro uracil and 5-fluoro cytosine modified DNA and RNA oligonucleotidesa

No. Sequencea Length Isolated yield
Molecular weight
(nt) OD 260 nm (nmol) Calculated (amu) Foundb (amu)
S2 5′-d(TCG TAC CGG AAG GTA CGA ACC dU5FTC CG)-3′ 26 88 320 7960.1 7958.8
S2b 5′-d(CCG GAA GGT ACG AAC CdU5FT CCG)-3′ 21 78 350 6420.1 6419.1
S4 5′-r(GAC CGG AAG GUC CGC CU5FU CC)-3′ 20 68 320 6374.8 6374.9
S4b 5′-r(CGG AAG GUC CGC CU5FU CC)-3′ 17 86 500 5395.2 5394.8
S5 5′-r(GAC CGG AAG GUC CGC CU5FU5F CC)-3′ 20 66 323 6392.8 6393.1
S5b 5′-r(CGG AAG GUC CGC CU5FU5F CC)-3′ 17 27 161 5413.2 5412.8
S6 5′-d(TCG TAC CGG AAG GTA CGA ACdC5F TTC CG)-3′ 26 150 550 7974.1 7973.6
S6b 5′-d(C CGG AAG GTA CGA ACdC5F TTC CG)-3′ 21 93 420 6434.1 6433.0
S7 5′-r(GAC CGG AAG GUC CGC C5FUU CC)-3′ 20 64 310 6374.8 6373.5
S7b 5′-r(CGG AAG GUC CGC C5FUU CC)-3′ 17 64 370 5395.2 5394.7

adU5F, 5-fluoro 2′-deoxy uridine; dC5F, 5-fluoro 2′-deoxy cytidine; U5F, 5-fluoro uridine; C5F, 5-fluoro cytidine.

bLC-ESI MS.