Table 1. Results of the ultradeep sequencing screening.
Sample | Total Reads | Total Bases | Average Read Length (bp) | Aligned Reads | Positions with High Substitution Frequency (>0.1%) | Positions with Low Substitution Frequency (<0.1%) | ||
SNPs | Clonal Mutations | Errors | ||||||
CC | 460,584 | 89,958,949 | 195.3 | 99.8% | 2 | 2 | 20 | 1,221 |
NC | 429,940 | 83,376,393 | 193.9 | 98.9% | 2 | 0 | 18 | 1,215 |
PBL | 496,358 | 96,210,962 | 193.8 | 99.8% | 2 | 0 | 35 | 1,151 |
H-PBL | 459,691 | 88,625,322 | 192.8 | 99.4% | 2 | 0 | 38 | 1,157 |
For each sample, the total number of sequence reads and sequenced bases are shown, together with the average length of the reads and the percentage of reads aligned to the reference sequence. The latter correspond to the fraction of reads that passed the quality filter of 454 sequencing. Reported also are the positions of eUCR41 with substitutions at high (>0.1%) and low (<0.1%) frequency. The threshold of 0.1% represents the detection power of 454 sequencing.