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. 2009 Sep 17;284(52):36557–36568. doi: 10.1074/jbc.M109.041194

FIGURE 7.

FIGURE 7.

The β1-α1 loop regulates the stability of the force-bearing AspRGD-MIDAS bond. A, the force-bearing bond between Oδ-2 of AspRGD (black) and the MIDAS ion (red) occurs at the top of the β1-α1 loop, shown in green, schematic, and transparent surface representations. When the AspRGD and Tyr122 hydrogen bond is formed (dashed line), the β1-α1 loop packs in tightly with the AspRGD side chain. Water molecules within 5 Å of the Oδ-2 atom are shown in blue van der Waals representation. B, when the bond between AspRGD–Tyr122 was formed under force, as evident from the trace of the heavy atom distance (right side, traced in black), shielding of force-bearing Oδ-2 atom from attack by free water molecules was increased (left side, traced in blue). Water contact events to the Oδ-2 atom were counted for each time step (picosecond intervals) by identifying the number of water molecules within 3 Å of the Oδ-2 atom. C, when the AspRGD–Tyr122 bond was already formed under force, this bond remained formed (right side, black trace) and the Oδ-2 atom remained shielded from attack by water molecules (left side, blue trace). When instead both of the Oδ-1 and Oδ-2 atoms coordinated the MIDAS ion (D) and the AspRGD–Tyr122 bond did not form (E, right side), the AspRGD atom that forms the force-bearing bond with the MIDAS ion, Oδ-2, was subject to a relatively higher level of water molecule attacks.