Table 4. Diversity comparison of tropical (A) and temperate (B) and subgroups.

Subset size	Allele (number)				within-group diversity (%)*				total diversity (%)#
	SNP		Haplotype		SNP		Haplotype		SNP		Haplotype
	A	B	A	B	A	B	A	B	A	B	A	B
10	2155	2162	1015	999	89.2	92.8	61.7	74.6	87.7	88.0	56.9	56.0
20	2309	2268	1236	1162	95.5	97.4	75.1	86.7	93.9	92.3	69.2	65.1
40	2390	2322	1414	1281	98.9	99.7	85.9	95.6	97.2	94.5	79.2	71.8
60	2414	2329	1503	1323	99.9	100.0	91.3	98.7	98.2	94.8	84.2	74.1
80	2417	2329	1559	1340	100.0	100.0	94.7	100.0	98.3	94.8	87.3	75.1
100	2417	2329	1590	1340	100.0	100.0	96.6	100.0	98.3	94.8	89.1	75.1
120	2417	2329	1613	1340	100.0	100.0	98.0	100.0	98.3	94.8	90.4	75.1
140	2417	2329	1632	1340	100.0	100.0	99.1	100.0	98.3	94.8	91.4	75.1
156	2417	2329	1643	1340	100.0	100.0	99.8	100.0	98.3	94.8	92.0	75.1
365	2417		1646		100.0		100.0		98.3		92.2

*the ratio of captured alleles within the subgroup compared to a given subset.

^#the ratio of captured alleles in the whole panel compared to a given subset.