Table 4.
Cluster No. | SNP | Positiona | MAF | RO2b | RN2c | (1-RO2)/(1-RN2) Ratio | p-Valued |
---|---|---|---|---|---|---|---|
2 | rs2844670 | 31,113,705 | 0.152 | 0.811 | 0.488 | 0.370 | 0.0004 |
rs3130933 | 31,240,064 | 0.133 | 0.945 | 0.522 | 0.116 | ||
rs3094609 | 31,273,545 | 0.145 | 0.954 | 0.542 | 0.101 | ||
rs3130532 | 31,316,432 | 0.142 | 0.956 | 0.531 | 0.094 | ||
rs7382297 | 31,355,046 | 0.142 | 0.953 | 0.530 | 0.100 | ||
rs2905722 | 31,557,306 | 0.139 | 0.747 | 0.614 | 0.656 | ||
5 | rs11967684 | 31,307,745 | 0.353 | 0.822 | 0.628 | 0.477 | 0.0004 |
rs9468925 | 31,366,816 | 0.353 | 0.902 | 0.464 | 0.183 | ||
rs3873379 | 31,370,148 | 0.290 | 0.876 | 0.478 | 0.237 | ||
rs3873380 | 31,370,417 | 0.303 | 0.938 | 0.499 | 0.124 | ||
rs9366778 | 31,377,152 | 0.387 | 0.750 | 0.517 | 0.518 | ||
rs3873386 | 31,381,724 | 0.374 | 0.852 | 0.514 | 0.305 | ||
20 | rs12177980 | 32,794,062 | 0.447 | 0.888 | 0.443 | 0.202 | 0.0003 |
rs9461799 | 32,797,507 | 0.447 | 0.888 | 0.443 | 0.202 | ||
rs13199787 | 32,813,254 | 0.449 | 0.882 | 0.436 | 0.209 | ||
rs10807113 | 32,830,164 | 0.462 | 0.890 | 0.471 | 0.209 | ||
rs7756516 | 32,831,895 | 0.462 | 0.890 | 0.471 | 0.209 | ||
rs2301271 | 32,833,171 | 0.413 | 0.856 | 0.427 | 0.251 | ||
rs7453920 | 32,837,990 | 0.413 | 0.856 | 0.425 | 0.250 | ||
rs6903130 | 32,840,188 | 0.495 | 0.820 | 0.369 | 0.286 | ||
rs6901084 | 32,844,914 | 0.469 | 0.890 | 0.432 | 0.194 | ||
24 | rs9468841 | 30,933,266 | 0.076 | 0.570 | 0.146 | 0.504 | 0.0007 |
rs7756521 | 30,956,232 | 0.178 | 0.888 | 0.360 | 0.175 | ||
rs3873334 | 31,004,126 | 0.167 | 0.929 | 0.336 | 0.107 | ||
rs12697941 | 31,012,693 | 0.152 | 0.928 | 0.302 | 0.104 | ||
rs3757340 | 31,029,861 | 0.270 | 0.554 | 0.307 | 0.644 | ||
183 | rs3868542 | 31,253,818 | 0.370 | 0.772 | 0.366 | 0.360 | 0.0001 |
rs887464 | 31,253,899 | 0.431 | 0.709 | 0.276 | 0.402 | ||
rs4122189 | 31,275,906 | 0.233 | 0.795 | 0.556 | 0.462 |
aBased on HapMap Data Release 23a (Phase II), NCBI Build 36, dbSNP Build 126
bSquared correlation coefficient between a given SNP and its own cluster
cThe next highest squared correlation coefficient between a given SNP and any other cluster
dp-Value from 1 df Wald χ2 for association with outcome, adjusted for all other clusters in the model