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. 2009 Dec 15;3(Suppl 7):S81. doi: 10.1186/1753-6561-3-s7-s81

Table 3.

The top ten pair-wise interaction results among SNPs near genes in the "protein complex assembly" gene collection from a logistic regression model

SNP 1 Chr Closet gene SNP 2 Chr Closet gene Interaction p-value
rs12969200 18 DSG1 rs12458537 18 MALT1 1.05 × 10-7
rs215590 16 MYH11 rs9391858b 6 C6orf10 1.86 × 10-6
rs13035837 2 DGKD rs2672221 11 NUP98 3.27 × 10-6
rs335524 1 CENPF rs215590 16 MYH11 1.31 × 10-5
rs10834677 11 ART5 rs17286488 16 MYH11 2.21 × 10-5
rs1553920 1 PIK3C2B rs6888329 5 ADRB2 5.38 × 10-5
rs9311951 3 MAGI1 rs2191498 7 CAV2 5.64 × 10-5
rs774265 7 SKAP2 rs1412243 9 APBA1 8.64 × 10-5
rs10739575 9 PSMD5 rs1805061 14 SLC7A7 9.88 × 10-5

aSNPs were filtered by main effects p-values = 0.20 and binned by r2 > 0.5, for a total of 572 SNPs

bSNPs from the adjustment model