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. 2010 Jan 1;5(1):e8541. doi: 10.1371/journal.pone.0008541

Table 2. T2D susceptible alleles and genotype frequencies for the ERF participants.

Locus Chr SNPs Position (bp) Alleles N Allele Freq. (n) Genotype Frequencies (n) Phw Freq. Ref.
A1/A2 A1 A2 A1A1 A1A2 A2A2
IGF2BP2 3 rs4402960 186994389 T/G 2891 28.8 71.2 8.8 40.1 51.1 0.238 0.29–0.30
(833) (2058) (253) (1159) (1479)
CDKN2B 9 rs10811661 22124094 T/C 2888 86.6 13.4 75.1 23 1.9 0.748 0.83–0.85
(2501) (387) (2168) 666 54
CDKAL1 6 rs7754840 20769229 C/G 2871 32.7 67.3 11.4 43.3 45.3 0.127 0.31–0.36
(993) (2115) (326) (1229) (1316)
PPARG 3 rs1801282 12368125 C/G 2955 90.1 9.9 81.3 17.7 1 0.757 0.82–0.86
(2662) (293) (2402) (523) (30)
SLC30A8 8 rs13266634 118253964 C/T 2934 69.2 30.8 47.4 43.6 9 0.260 0.61–0.75
(2030) (904) (1391) (1278) (265)
HHEX 10 rs1111875 94452862 C/T 2940 59.2 40.8 34.9 48.4 16.7 0.939 0.52–0.64
(1740) (1200) (1028) (1423) (489)
KCNJ11 11 rs5219 17366148 T/C 2935 33.6 66.4 11.4 44.4 44.2 0.804 0.46–0.47
(986) (1949) (335) (1304) (1296)
TCF7L2 10 rs7903146 114748339 T/C 2916 28.5 71.5 7.8 41.3 50.9 0.467 0.18–0.26
(831) (2084) (228) (1204) (1482)
FTO 16 rs8050136 52373776 A/C 2942 43.1 56.9 17.2 51.8 31.0 0.011 0.38
(1268) (1674) (505) (1524) (913)

Chr. = Chromosome, Risk allele for type 2 diabetes underlined. Phw = p value for hardy-weinberg. Freq. Ref. = reference frequency.