Table 4.
Summary of 50 conserved syntenies identified by comparison of 95 mate-paired genes of channel catfish with genomic locations of those on the zebrafish draft genome sequence.
| Catfish BAC ID |
SP6 hits | T7 hits | zebrafish Chr | Chr location (Mb) | Distance (bp) |
|---|---|---|---|---|---|
| 035I16 | [GenBank:NP_001038735] | [GenBank:XP_689146] | 2 | 38.61 | 18,048 |
| 063L16 | [GenBank:NP_001012377] | [GenBank:NP_001092217] | 2 | 19.25 | 48,679 |
| 026B05 | [GenBank:XP_001921249] | [GenBank:CAI20867] | 3 | 31.82 | 4,418 |
| 098D05 | [GenBank:CAI11873] | [GenBank:NP_001038462] | 4 | 1.82 | 301,470 |
| 007M06 | [GenBank:XP_001333162] | [GenBank:NP_571105] | 5 | 5.46 | 379,579 |
| 028M04 | [GenBank:XP_687685] | [GenBank:NP_958867] | 5 | 22.23 | 133,063 |
| 074L07 | [GenBank:XP_001334912] | [GenBank:XP_687570] | 5 | 15.69 | 290,598 |
| 035N11 | [GenBank:NP_001032187] | [GenBank:NP_958882] | 6 | 18.25 | 231,524 |
| 040J24 | [GenBank:XP_686613] | [GenBank:NP_991309] | 6 | 7.37 | 443,524 |
| 077F04 | [GenBank:NP_001034906] | [GenBank:NP_001038813] | 6 | 11.42 | 484,877 |
| 032F20 | [GenBank:XP_691291] | [GenBank:NP_001075159] | 7 | 28.40 | 244,425 |
| 062B16 | [GenBank:NP_001008651] | [GenBank:NP_001017550] | 7 | 15.05 | 222,416 |
| 075K10 | [GenBank:NP_956505] | [GenBank:NP_001070187] | 7 | 13.34 | 268,455 |
| 103I21 | [GenBank:NP_998033] | [GenBank:NP_001159825] | 7 | 22.34 | 293,845 |
| 047N13 | [GenBank:XP_699919] | [GenBank:XP_699627] | 8 | 23.84 | 203,260 |
| 057N22 | [GenBank:XP_001923800] | [GenBank:NP_997066] | 9 | 36.69 | 163,677 |
| 076H22 | [GenBank:NP_001004563] | [GenBank:XP_001921910] | 9 | 13.84 | 313,352 |
| 105N24 | [GenBank:NP_001122018] | [GenBank:NP_997992.2] | 9 | 27.37 | 268,271 |
| 056A23 | [GenBank:NP_998295] | [GenBank:NP_001103164] | 10 | 7.50 | 486,745 |
| 068C21 | [GenBank:NP_001019272] | [GenBank:XP_001920077] | 10 | 17.72 | 104,067 |
| 093K02 | [GenBank:XP_001344325] | [GenBank:XP_001919728] | 10 | 41.67 | 152,479 |
| 096A14 | [GenBank:NP_001120805] | [GenBank:NP_997775] | 11 | 10.02 | 980,276 |
| 010B15 | [GenBank:NP_956715] | [GenBank:NP_956756] | 12 | 25.17 | 111,625 |
| 041B24 | [GenBank:NP_001002607] | [GenBank:XP_693784] | 12 | 13.59 | 398,886 |
| 109K22 | [GenBank:XP_001920588] | [GenBank:XP_001920550] | 12 | 25.55 | 449,096 |
| 018H11 | [GenBank:NP_956915] | [GenBank:NP_997743] | 13 | 23.23 | 293,181 |
| 026C08 | [GenBank:NP_001119869] | [GenBank:NP_956611] | 13 | 23.50 | 201,663 |
| 027E09 | [GenBank:XP_001922173] | [GenBank:XP_001921791] | 14 | 0.22 | 574,761 |
| 103F19 | [GenBank:NP_571477] | [GenBank:XP_001919973] | 14 | 22.90 | 256,143 |
| 022D09 | [GenBank:NP_001096112] | [GenBank:XP_684421] | 15 | 29.14 | 418,219 |
| 059B20 | [GenBank:XP_682817] | [GenBank:XP_691794] | 15 | 27.80 | 94,396 |
| 077H08 | [GenBank:XP_001920240] | [GenBank:NP_001070609] | 15 | 6.05 | 339,215 |
| 004O03 | [GenBank:NP_001020707] | [GenBank:NP_001020642] | 16 | 10.40 | 149,618 |
| 075M09 | [GenBank:NP_001107266] | [GenBank:NP_001082899] | 16 | 8.30 | 120,355 |
| 104I08 | [GenBank:NP_571871] | [GenBank:NP_694503] | 16 | 27.17 | 214,517 |
| 013P16 | [GenBank:NP_001076304] | [GenBank:NP_001038173] | 18 | 18.65 | 366,849 |
| 042J20 | [GenBank:NP_001037796] | [GenBank:NP_001038370] | 18 | 32.85 | 223,781 |
| 021L13 | [GenBank:NP_001038343] | [GenBank:XP_688911] | 19 | 17.40 | 286,019 |
| 052N18 | [GenBank:XP_001921158] | [GenBank:NP_956134] | 19 | 7.59 | 345,553 |
| 056A09 | [GenBank:NP_001018463] | [GenBank:NP_001038416] | 19 | 13.46 | 122,217 |
| 065M02 | [GenBank:XP_001922809] | [GenBank:NP_001038686] | 19 | 15.37 | 430,325 |
| 080O21 | [GenBank:NP_956277] | [GenBank:NP_571262] | 19 | 17.06 | 389,643 |
| 086C16 | [GenBank:XP_001340912] | [GenBank:NP_001038562] | 19 | 6.00 | 364,590 |
| 010H22 | [GenBank:NP_998602] | [GenBank:XP_001920851] | 21 | 2.24 | 240,019 |
| 034I14 | [GenBank:NP_001038838] | [GenBank:NP_956334] | 21 | 20.16 | 306,102 |
| 081J10 | [GenBank:NP_001002411] | [GenBank:NP_001073439] | 21 | 22.12 | 277,818 |
| 099H22 | [GenBank:NP_001076277] | [GenBank:XP_699221] | 22 | 7.03 | 115,754 |
| 053P11 | [GenBank:NP_001002173] | [GenBank:NP_001035137] | 23 | 30.73 | 197,703 |
| 068O10 | [GenBank:XP_001339131] | [GenBank:XP_689922] | 23 | 18.01 | 332,973 |
| 105H10 | [GenBank:NP_001103636] | [GenBank:NP_001098596] | 23 | 33.36 | 274,318 |
| Average | 278,648 |