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. 2009 Dec 9;8:282. doi: 10.1186/1475-2875-8-282

Table 1.

Primers and probes used in the identification of Anopheles funestus species using real time assays (MCA, HRM and TaqMan)

Name Primer
/probe
Reporter Dye Sequence (5'-3') Quencher
FUN1 Primer - GGCATCGATGGGTTAATCATG -
VAN1 Primer - AAACCCCAAGATGTGCTCC -
VAN3 primer - GGTTTTCAAATGAATCTC -
N PAR Primer - ATACTTGTGTGTGTGTGTATTTG -
RIV TM probe Cy5 CTATGGCGAGACCCCGTCTAGTG BHQ2a
FUN TM probe ROX CATGGGGAAATTCAATCGAAAACCTCT BHQ2a
PAR TM probe VIC CGG AAC CTA GCT TGG MGBNFQb
VAN TM probe Quasar 705 CGT TGT GAA AAA TGG AGA TTC ATT TGA AAA CC BHQ2a
LEES TM probe 6-FAM CCG ACC GAT GTA CA MGBNFQb

aBHQ2 (black hole quencher 2)

bMGBNFQ (minor groove binder non-fluorescent quencher)