TABLE 1.
LapBa | LapB-4-methylcatechola | LapB-3-methylcatechola | |
---|---|---|---|
Data collection | |||
Wavelength (Å) | 1.23983 | 1.23985 | 1.00000 |
Ligand (mm) | 5 | 5 | |
Cell dimensions | |||
a, b, c (Å) | 94.9, 97.0, 133.4 | 96.1, 97.6, 133.7 | 95.9, 97.4, 133.5 |
α, β, γ (deg) | 90.0, 90.0, 90.0 | 90.0, 90.0, 90.0 | 90.0, 90.0, 90.0 |
Resolution (Å) | 50.0-2.3 (2.38-2.30)b | 50.0-1.94 (2.01-1.94) | 50.0-2.0 (2.07-2.00) |
Unique reflections | 55,660 | 93,774 | 85,226 |
Completeness (%) | 99.9 (99.4) | 99.9 (100.0) | 100.0 (100.0) |
Redundancy | 13.0 | 11.5 | 7.7 |
I/σ (I) | 23.2 (3.6) | 35.9 (2.7) | 18.8 (3.2) |
Rsym (%)c | 11.9 (65.2) | 7.1 (75.4) | 11.1 (57.6) |
Refinement | |||
Resolution (Å) | 50.0-2.3 | 50.0-1.94 | 50.0-2.0 |
No. of reflections | |||
Working set/test set | 42,020/4,721 | 73,387/8,169 | 64,010/7,191 |
Rwork (%)d | 20.1 | 24.4 | 22.2 |
Rfree (%)d | 26.9 | 27.8 | 26.9 |
r.m.s.d. from ideal geometry | |||
Bond lengths (Å) | 0.009305 | 0.012134 | 0.006015 |
Bond angles (degrees) | 1.61074 | 1.88504 | 1.39185 |
Average B-factor (Å2) | 30.4 | 30.4 | 26.9 |
No. of molecules | |||
Protein atoms | 9,277 | 9,328 | 9,399 |
Water atoms | 332 | 351 | 409 |
Ligand atoms | 38 | 33 | |
Ramachandran analysis | |||
Most favored/allowed (%) | 85.2/14.8 | 87.3/12.7 | 87.8/12.2 |
Disallowed (%) | 0 | 0 | 0 |
a Residue ranges: substrate-free LapB, subunit A (Ala-2–Arg-298) and subunits B, C and D (Ala-2–Phe-289); LapB-4-methylcatechol, subunits A and B (Ala-2–Phe-289), and subunits C and D (Ala-2–Gln-297); LapB-3-methylcatechol, subunit A (Ala-2–Arg-298), subunits B and D (Ala-2–Phe-289), and subunit C (Ala-2–Gln-297).
b Numbers in parentheses refer to data in the highest resolution shell.
cRsym = Σ|Ih − <Ih>|/ΣIh, where Ih is the observed intensity and <Ih> is the average intensity.
d Rwork = Σ‖Fobs|-k|Fcal‖/Σ|Fobs|; Rfree was calculated using 10% of the data excluded from refinement.