. Author manuscript; available in PMC: 2010 Jul 1.

Published in final edited form as: Mol Psychiatry. 2009 Oct 20;15(1):29–37. doi: 10.1038/mp.2009.109

Table 2. Results of haplotype analyses for SNPs in ZNF804A.

Associated haplotypes are shown in bold.

Block	HT	Freq.	f_Cases	f_Controls	Chi Sq	p	P
Block 1	AC	0.577	0.564	0.601	3.935	0.0473	0.558
	GG	0.288	0.302	0.263	5.531	0.0187	0.284
	GC	0.135	0.134	0.137	0.062	0.8033	1

Block 2	CT	0.557	0.567	0.541	1.956	0.1619	0.952
	GC	0.312	0.301	0.332	3.238	0.072	0.721
	CC	0.13	0.132	0.127	0.171	0.6796	1

Block 3	TTAA	0.304	0.322	0.272	8.626	0.0033	0.058
	CTAA	0.194	0.187	0.207	1.822	0.1771	0.964
	TTGC	0.191	0.18	0.209	3.674	0.0553	0.611
	TGGC	0.177	0.172	0.184	0.68	0.4094	1
	TTGA	0.133	0.137	0.126	0.753	0.3856	1
rs7597593 + Block 3	TTTAA	0.221	0.24	0.188	11.221	0.0008	0.017
	CTTGC	0.186	0.175	0.204	4.018	0.045	0.582
	CTGGC	0.176	0.171	0.183	0.625	0.4293	1
	CCTAA	0.12	0.112	0.134	3.23	0.0723	0.749
	TTTGA	0.118	0.123	0.109	1.171	0.2792	0.998
	CTTAA	0.082	0.082	0.081	0.016	0.8983	1
	TCTAA	0.075	0.075	0.076	0.011	0.915	1
	CTTGA	0.015	0.015	0.015	0.005	0.9419	1

Block 4	AG	0.57	0.558	0.59	2.958	0.0855	0.789
	GA	0.315	0.327	0.295	3.329	0.0681	0.699
	GG	0.115	0.115	0.115	0	0.9901	1

f_{Cases/Controls}: Frequency of indicated haplotype in cases and controls respectively; Chi-Sq: Chi-square test statistic; p and P: asymptotic and empirical permutation significance levels respectively. The unblocked, associated SNP rs7597593 was included in analysis with block 3 SNPs (including rs 1344706).