Table 2.
Distribution of HLA haplotypes in HIV-1 positive and population control groups
| HIV-1 positive | Population control | HIV-1 positive | Population control | ||||
|---|---|---|---|---|---|---|---|
| (2-locus) Haplotype | Frequency | (2-locus) Haplotype | Frequency | (3-locus) Haplotype | Frequency | (3-locus) Haplotype | Frequency |
| A*02 B*46 | 0.1437 | A*02 B*46 | 0.1230 | A*02 B*46 DRB1*09 | 0.0640 | A*02 B*46 DRB1*09 | 0.0659 |
| A*11 B*4001G | 0.0597 | A*11 B*4001G | 0.0651 | A*11 B*46 DRB1*09▲ | 0.0316 | A*33 B*58 DRB1*03 | 0.0306 |
| A*33 B*58 | 0.0470 | A*33 B*58 | 0.0569 | A*33 B*58 DRB1*03 | 0.0282 | A*11 B*1502G DRB*12▲ | 0.0255 |
| A*11 B*46▲ | 0.0463 | A*11 B*1502G▲ | 0.0454 | A*02 B*46 DRB1*08▲ | 0.0274 | A*11 B*13 DRB1*15 | 0.0218 |
| A*11 B*13 | 0.0448 | A*24 B*4001G | 0.0447 | A*02 B*46 DRB1*14 | 0.0230 | A*11 B*46 DRB1*09 | 0.0186 |
| A*02 B*4001G | 0.0414 | A*11 B*13 | 0.0437 | A*11 B*13 DRB1*15 | 0.0208 | A*33 B*58 DRB1*13▲ | 0.0174 |
| A*24 B*4001G | 0.0300 | A*02 B*4001G | 0.0312 | A*11 B*4001G DRB1*15▲ | 0.0194 | A*02 B*46 DRB1*08 | 0.0167 |
| A*11 B*1501G | 0.0293 | A*11 B*46 | 0.0296 | A*30 B*13 DRB1*07 | 0.0161 | A*02 B*46 DRB1*14 | 0.0152 |
| A*11 B*1502G | 0.0281 | A*11 B*1501G | 0.0231 | A*11 B*1501G DRB1*04 | 0.0160 | A*30 B*13 DRB1*07 | 0.0147 |
| A*24 B*54▲ | 0.0234 | A*11 B*51 | 0.0222 | A*01 B*37 DRB1*10 | 0.0118 | A*11 B*4001G DRB1*12 | 0.0137 |
| A*11 B*51 | 0.0224 | A*02 B*38 | 0.0218 | A*02 B*4001G DRB1*09 | 0.0112 | A*11 B*4001G DRB1*04 | 0.0120 |
| A*30 B*13 | 0.0186 | A*30 B*13 | 0.0191 | A*02 B*4001G DRB1*04▲ | 0.0103 | A*11 B*1501G DRB1*04 | 0.0104 |
| A*02 B*13 | 0.0171 | A*02 B*13 | 0.0189 | A*24 B*54 DRB1*04 | 0.0102 | A*11 B*4001G DRB1*09 | 0.0097 |
| A*24 B*1501G | 0.0163 | A*11 B*55 | 0.0167 | A*11 B*46 DRB1*08▲ | 0.0096 | A*11 B*1502G DRB1*15 | 0.0093 |
| A*02 B*55 | 0.0160 | A*24 B*13 | 0.0165 | A*11 B*4001G DRB1*09 | 0.0096 | A*11 B*13 DRB1*12 | 0.0088 |
| A*02 B*1501G | 0.0153 | A*24 B*1501G | 0.0151 | A*11 B*4001G DRB1*12 | 0.0089 | A*11 B*4001G DRB1*08 | 0.0085 |
| A*02 B*38 | 0.0151 | A*24 B*46 | 0.0145 | A*02 B*46 DRB1*04 | 0.0087 | A*24 B*4001G DRB1*09 | 0.0085 |
| A*24 B*46 | 0.0146 | A*24 B*51 | 0.0137 | A*02 B*4001G DRB1*12▲ | 0.0085 | A*24 B*4001G DRB1*15 | 0.0079 |
| A*24 B*4002G | 0.0145 | A*02 B*51 | 0.0132 | A*24 B*46 DRB1*09 | 0.0084 | A*11 B*51 DRB1*09 | 0.0079 |
| A*01 B*37▲ | 0.0145 | A*02 B*1502G | 0.0122 | A*02 B*38 DRB1*16 | 0.0081 | A*02 B*38 DRB1*16 | 0.0070 |
Only the top 20 most common haplotypes are listed.
▲: indicates P value < 0.05 of comparative frequencies in the HIV-1 positive and population control group. P value has been adjusted with Yates' correction.