FIG. 7.

3D structure model of PUUV Gc with SFV E1 as a template. The Swiss-Model-generated PDB coordinate file of PUUV Gc and the SFV E1 used as a template (PBD code, 2ALA) (45) were visualized with YASARA View. The model and template were superimposed, and the images shown were captured in the same respective angles. DI, DII, and DIII are shown in red, yellow, and blue, respectively, as suggested by Rey and collaborators (41). The PDB coordinates of the created Gc model were analyzed using VADAR, version 1.5, and the Ramachandran plots of the PUUV Gc model and the SFV E1 template obtained from the VADAR server (http://redpoll.pharmacy.ualberta.ca/vadar) are presented below for the respective structures.