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. Author manuscript; available in PMC: 2009 Dec 28.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2008 Mar;17(3):645–654. doi: 10.1158/1055-9965.EPI-07-2518
Gene Forward primer, probe, and reverse primer
ACTB Forward: TGGTGATGGAGGAGGTTTAGTAAGT
Probe: 6FAM-ACCACCACCCAACACACAATAACAAACACA-TAMRA
Reverse: AACCAATAAAACCTACTCCTCCCTTAA
DAPK1 Forward: GGAGAGGGTGGTTACGGTGTT
Probe: 6FAM-CAACCTACGACAACGATAA-MGB
Reverse: ACCCTCGCCCAAACGATAC
RARB Forward: TGAGGATTGGGATGTCGAGAA
Probe: 6FAM-CTACTCGAATCGCTCG-MGB
Reverse: CCCGACGATACCCAAACAAA
CCND2 Forward: CGTGTTAGGGTCGATCGTGTT
Probe: 6FAM-ACTACGATAAAATCGCCG-MGB
Reverse: CTCGCCAAACTTTCTCCCTAAA
RASSF1 Forward: TAGGTTTTTATTGCGCGGTTTT
Probe: 6FAM-CGCGAACCGAACGAA-MGB
Reverse: TACTTCGCTAACTTTAAACGCTAACAA
OPCML Forward: CGGTTAGGGATGGAGTTGTTG
Probe: 6FAM-CCGAACCGCCGAAA-MGB
Reverse: CGCCTTCCTCCCGAAAAC
CDH13 Forward: GATTTTTGGGTTCGGAATGATTT
Probe: 6FAM-TTTTCGTCGTCGCGATC-MGB
Reverse: ATCGCCCGACACGAACAA
BVES Forward: GGACGGAGTGGGCGATATC
Probe: 6FAM-CCTACGTACAACCGAACG-MGB
Reverse: CCTCGAACCGCGCAAA
APC Forward: TTATATGTCGGTTACGTGCGTTTATAT
Probe: 6FAM-CCCGTCGAAAACCCGCCGATTA-TAMRA
Reverse: GAACCAAAACGCTCCCCAT
CDH1 Forward: AATTTTAGGTTAGAGGGTTATCGCGT
Probe: 6FAM-CGCCCACCCGACCTCGCAT-TAMRA
Reverse: TCCCCAAAACGAAACTAACGAC
FHIT Forward: CGCGCGTTAGGTTATTATTTCG
Probe: 6FAM-TCGGCGTCGTTTAC-MGB
Reverse: ACCCTAAAACCCTCGTAAAACGA
MLH1 Forward: CGTTATATATCGTTCGTAGTATTCGTGTT
Probe: 6FAM-CAAACGCCACTACGAAA-MGB
Reverse: ACCTAATCTATCGCCGCCTCAT
IGSF4 Forward: AGGGAGCGAGGTTTTTCGA
Probe: 6FAM-CGAACCCAACCCGAC-MGB
Reverse: ACGAAATCCGAACAAACCAATC
MGMT Forward: GCGTTTCGACGTTCGTAGGT
Probe: 6FAM-CGATACGCACCGCGAA-MGB
Reverse: ACCCAAACACTCACCAAATCG
CDKN2A Forward: TGGAGTTTTCGGTTGATTGGTT
Probe: 6FAM-ACCCGACCCCGAACCGCG-TAMRA
Reverse: AACAACGCCCGCACCTCCT
RUNX Forward: CGAGGTTTCGTTGGTTCGA
Probe: 6FAM-CCGCACGCGAAAC-MGB
Reverse: GCCGCGACCCAAACAA
FANCF Forward: TTTTTATTGGTTGTGTAGTCGTCGTT
Probe: 6FAM-CCATTCGCACGACTC-MGB
Reverse: CATCCATCGACGCTTTAATCG
TMS1 Forward: CGTTATTTTGGATGCGTTGGA
Probe: 6FAM-ACTCCTCGACGATCA-MGB
Reverse: ACGACACCGACAACAACTTCAA
IGFBP3 Forward: GGGCGTGTTTTGGGTTATTTC
Probe: 6FAM-CGAACGCGCCGACC-MGB
Reverse: CGCAATACTCGCATCTAAACGA
CDKN2B Forward: TCGTTTTTTTGCGGTTTGG
Probe: 6FAM-AACCCGAAACTAACGACCGA-MGB
Reverse: CGCGCCCGCTAATTCTTAA
KCNH5 Forward: ATTGTGTTTCGCGGAGTTTGT
Probe: 6FAM-CCGCACACGAAACT-MGB
Reverse: GCCGCTACCCAAACTATAACGA
KCNH8 Forward: CGTCGCGCGGTGTTTC
Probe: 6FAM-CTCTTTCCGAACGAACG-MGB
Reverse: GCCCCGAACCACTACGAA
PCSK6 Forward: TCGGGAGGTTCGAAACGTT
Probe: 6FAM-CCAAAAATCGACGAAAAA-MGB
Reverse: ACACCGCGTCCCGAAAA
PTEN Forward: TTAAGCGTTAGTTTCGATAGCGTTT
Probe: 6FAM-TCGAACCAACCTCCCGAA-MGB
Reverse: CTACGCCGCGACGAAAA
P14ARF Forward: CGCGGCGGGTCGTA
Probe: 6FAM-CGACGAAAACATAATACGCA-MGB
Reverse: CGACTACCGAACTCGACCCTAA
SOCS3 Forward: TGTGGATTTTACGGTCGTTAATATTT
Probe: 6FAM-AACCCGCGCTACGC-MGB
Reverse: AACGACGCGACGACGAAA
PTGS2 Forward: CGAAAAGGCGGAAAGAAATAGTT
Probe: 6FAM-ATTAATCGCTAACCGAAAAA-MGB
Reverse: TCCTAACGCTCACTACAAATCGTATAA
GSTP1 Forward: TCGGAGGTCGCGAGGTT
Probe: 6FAM-CTACGACGACGAAACT-MGB
Reverse: CGCGCGTACTCACTAATAACGA