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. 2010 Jan 22;6(1):e1000648. doi: 10.1371/journal.pcbi.1000648

Table 2. Selected predicted secondary targets of compound 1 in pathogens.

Protein Species AD Score SOIPPA p-value Sequence Identity FATCAT p-value
probable ATP-dependent DNA ligase (2FAO:A) Pseudomonas aeruginosa −10.57 1.34×10−2 5% 0.440
UDP-galactose 4-epimerase (1GY8:D) T. brucei −10.29 1% 0.622
dTDP-D-glucose 4,6-dehydratase (1KET:B) Streptococcus suis −9.55 5% 0.502
dihydrofolate reductase-thymidylate (1J3I:C) Plasmodium falciparum −9.53 1.34×10−2 5% 0.428
DNA ligase, NAD-dependent (1TAE:B) E. faecalis v583 −9.49 8% 3.56×10−2
dTDP-D-glucose 4,6-dehydratase (1G1A:C) S. enterica −9.24 1% 0.529
adenine phosphoribosyltransferase (1MZV:A) Leishmania tarentolae −8.61 11% 0.649
UTP-gluc-1-P uridylyltransferase 2 (2OEG:A) Leishmania major −8.56 7.82×10−3 8% 0.724
purine nucleoside phosphorylase (2B94:A) Plasmodium knowlesi −7.61 2% 0.650
DNA ligase (1ZAU:A) M. tuberculosis −6.75 4% 2.82×10−2

“AD score” refers to the AutoDock-predicted energy of binding to 1; “SOIPPA p-value” refers to the similarity between the secondary-target and TbREL1 active sites; “sequence identity” refers to the percent amino-acid identity with TbREL1 as computed by the CLUSTALW2 algorithm; and “FATCAT p-value” refers to the structural similarity between the secondary target and TbREL1. Protein sequences were extracted from PDB seqres headers.