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. 2009 Dec 14;10:83. doi: 10.1186/1471-2156-10-83

Table 1.

Exact test for Hardy-Weinberg equilibrium for microsatellite loci typed in 96 unrelated fish from the NCCCWA rainbow trout selective breeding program.

Locus GenBank
Acc. or reference		 OMY Posit. Kos cM1 Number Alleles PIC2 Hetero- zygosity Allelic Diversity χ2 DF Pr > χ2 Exact P3
OMM3006 G73806 13 39.9 13 0.844 0.802 0.858 127.6 78 0.0003 0.0615
OMM5092 CA348764 13 39.9 5 0.705 0.708 0.746 20.7 10 0.0231 0.0152
OMY27DU [4] 13 44.6 5 0.575 0.594 0.618 5.7 10 0.8402 0.7166
OMM1670 BV212162 13 44.6 16 0.889 0.844 0.898 242.4 120 <.0001 0.0072
CA341677 CA341677 13 44.6 6 0.544 0.604 0.590 99.5 15 <.0001 0.2147
OMM1687 BV212173 13 45.7 3 0.390 0.417 0.501 7.2 3 0.0659 0.0325
Oneu8 U56708 14 22.2 6 0.596 0.583 0.654 5.8 15 0.9824 0.8181
OMM1312 G73552 14 49.2 16 0.882 0.885 0.891 125.5 120 0.3477 0.1418
OMYRGT2TUF AB087587 14 50.7 9 0.724 0.750 0.748 34.9 36 0.5218 0.6786
OMM1596 BV212112 14 53.9 13 0.857 0.844 0.871 98.9 78 0.0552 0.0068
OMM5271 BV211986 14 58.3 11 0.806 0.802 0.827 53.6 55 0.5286 0.4101
OmyRGT41TUF [4] 14 58.3 16 0.876 0.854 0.885 114.9 120 0.6136 0.3824
Ogo1UW AF007827 14 58.3 5 0.620 0.635 0.679 98.9 10 <.0001 0.1218
OMM3089 BV718454 14 62.5 4 0.612 0.760 0.679 6.1 6 0.4098 0.3408
OMM1447 BV079591 14 63.4 22 0.936 0.823 0.940 237.6 231 0.3696 0.0017
OMM3115 AB162343 14 63.4 12 0.843 0.490 0.859 219.2 66 <.0001 <.0001
BHMS429 AF256719 14 64.3 12 0.890 0.885 0.898 50.5 66 0.9214 0.9010
OMYFGT5TUF [4] 14 64.3 10 0.569 0.604 0.620 40.8 45 0.6515 0.3260
BHMS185 AF256675 14 72.9 3 0.454 0.583 0.546 2.8 3 0.4239 0.2933
OMM1415 BV722101 14 75.0 11 0.793 0.719 0.811 76.0 55 0.0317 0.0233
OMM1356 BV005148 14 79.1 4 0.385 0.281 0.432 138.6 6 <.0001 <.0001
CR374305 CR374305 14 81.2 13 0.790 0.646 0.809 439.9 78 <.0001 <.0001
OMM1467 BV079662 14 82.7 12 0.866 0.906 0.878 79.2 66 0.1271 0.1546
OMM1643 BV212150 14 86.5 11 0.764 0.750 0.785 89.7 55 0.0022 0.0354
OMM5143 BV211872 14 106.2 11 0.828 0.427 0.846 271.4 55 <.0001 <.0001
OMM3044 BV722031 14 130.0 8 0.739 0.396 0.775 242.4 28 <.0001 <.0001
OMM1712 BV212193 17 81.7 13 0.855 0.823 0.868 67.9 78 0.7859 0.5445
CA367675 CA367675 17 84.8 12 0.851 0.917 0.864 51.7 66 0.9017 0.8540
OMM5043 CA349167 17 89.5 8 0.795 0.750 0.820 34.5 28 0.1836 0.1205
OMM3126 BV683039 17 90.3 18 0.904 0.833 0.911 144.1 153 0.6841 0.1027
OMM1437 BV722116 17 91.3 15 0.897 0.865 0.904 105.6 105 0.4648 0.1512
OMM1357 BV005149 17 105.4 17 0.867 0.833 0.877 207.1 136 <.0001 0.0305
OMM5227 BX301679 17 107.8 7 0.697 0.510 0.738 91.2 21 <.0001 <.0001
CA041953 CA041953 17 136.3 3 0.420 0.458 0.476 2.0 3 0.5711 0.4895
OMM1026 AF346683 sex 0.0 15 0.880 0.896 0.890 123.9 105 0.1007 0.5136
OMM1461 BV079604 sex 17.7 5 0.637 0.625 0.683 5.1 10 0.8870 0.7533
OMYRGT28TUF AB087599 sex 21.1 15 0.830 0.760 0.846 172.6 105 <.0001 0.1674
OMM1000 AF346664 sex 21.1 3 0.385 0.417 0.425 0.5 3 0.9170 0.9396
OMM5031 CA349143 sex 29.7 9 0.722 0.865 0.753 59.8 36 0.0076 0.0005
OMM5032 CA349143 sex 29.7 11 0.842 0.844 0.857 94.7 55 0.0007 0.0895
BX076085 BX076085 sex 35.6 12 0.868 0.646 0.879 156.8 66 <.0001 <.0001
OMM1372 BV005159 sex 36.0 6 0.560 0.323 0.604 98.1 15 <.0001 <.0001
OMM1212 BV722077 sex 44.3 11 0.794 0.781 0.813 61.9 55 0.2421 0.2160
OMM1443 BV079588 sex 44.3 13 0.873 0.896 0.884 94.5 78 0.0984 0.0511
OMM3109 BV718471 sex 46.2 13 0.754 0.677 0.771 101.8 78 0.0363 0.0754
OMM1456 BV079600 sex 46.9 7 0.691 0.729 0.736 14.6 21 0.8447 0.7070
OMM1118 AF375026 sex 47.7 24 0.921 0.948 0.925 314.2 276 0.0564 0.1749
OMM1405 BV722096 sex 51.3 11 0.817 0.594 0.835 141.1 55 <.0001 <.0001
OMM1665 BV212292 sex 58.5 17 0.881 0.656 0.890 325.0 136 <.0001 <.0001

1Microsatellite loci position in the NCCCWA rainbow trout genetic map [9].

2Polymorphic information content (PIC).

3Exact P-value estimated using 10,000 permutations with SAS Proc Allele [70].