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Allelic intensities for a single SNP across multiple samples. (A) The A allele intensity is plotted against the B allele intensity for each wild-type training sample at a single polymorphic probe. The MAP estimates of the linearly separated mean allelic intensities for genotypes AA, AB, and BB are indicated in red. (B) The same allelic intensities are plotted using the cancer samples. The significant reduction in clustering is evident.
