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. 2009 Jun 19;25(17):2236–2243. doi: 10.1093/bioinformatics/btp376

Table 1.

Gene modules identified by KMF

Module Function
1 Lipid metabolism and lipid processing.
2 Signaling proteins, intracellular and membrane protein-mediated: GPCR signaling, chemokine/TNF-α receptor signaling and ion channel-related signaling.
3 Glucose metabolism: glycolysis and pentose phosphate pathway.
4 Post-translational modification: ubiquitin-proteasome pathway, protein folding, transportation, phosphorylation.
5 Reactive oxygen species (ROS) homeostasis, redox system regulation and the TCA cycle.
6 Energy: ATP and GTP metabolism.
7 Protein synthesis: translation initiation and transcription.
8 Amino acid metabolism and urea cycle.
9 Apoptosis: executors and regulators.