Skip to main content
. 2010 Jan 8;86(1):34–44. doi: 10.1016/j.ajhg.2009.12.002

Figure 2.

Figure 2

Visual Haplotypes of the Highly Differentiated Loci

Each panel displays haplotypes for all 105 unrelated males in the HapMap data. SNPs are listed in order of coordinate position across the top of each panel, and each row depicts the haplotype for a single HapMap sample. A yellow rectangle indicates the minor allele for a given SNP across the 105 samples, while a blue box indicates the common allele.

(A) A 1 Mb interval (coordinates 19–20 Mb) in the PDHA1 cluster.

(B) A 2 Mb interval (coordinates 63–65 Mb) in the centromeric cluster.

(C) A 1.2 Mb interval (coordinates 103.7–104.9 Mb) in the IL1RAPL2 cluster. Note, the 1.4 kb gene TEX13A is not shown.

(D) A 1 Mb interval (coordinates 110–111 Mb) in the TRPC5 cluster.

(E) A 1 Mb interval (coordinates 147–148 Mb) centered on the 500 kb gene AFF2. All genes in the interval are denoted by black rectangles at the top of each visual haplotype.