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. 2010 Jan 8;86(1):34–44. doi: 10.1016/j.ajhg.2009.12.002

Table 2.

Summary Statistics for the IL1RAPL2 Resequencing Data

Region
I II III
Positiona 104,421,433–104,425,062 104,633,434–104,635,208 104,641,039–104,642,851
Length (bp) 3630 1776 1815
FSTb 0.674 0.809 0.679
Segregating sitesc
 All 21 (4) 13 (4) 11 (4)
 African 16 7 10
 Non-African 11 7 1
θ per site × 10−3
 All 1.03 1.31 1.08
 African 1.03 0.92 1.29
 Non-African 0.57 0.75 0.1
π per site × 10−3
 All 0.66 0.81 0.75
 African 0.71 0.96 1.52
 Non-African 0.25 0.07 0.01
Tajima's D
 All −0.996 −0.976 −0.765
 African −0.992 0.102 0.538
 Non-African −1.469 −2.086 −1.015
Fay and Wu's H
 All 0.084 −7.285 −0.147
 African −0.738 −1.105 0.322
 Non-African −2.563 −7.804 0.018

Statistical significance: indicates p < 0.05 determined from 104 coalescent simulations.

a

Positions are from the March 2006 assembly of the UCSC genome browser (NCBI Build 36.1).

b

Window-based estimate of the two-population FST statistic between African and non-African populations.

c

The number in parentheses is the number of segregating sites where the common allele (i.e., the allele having a frequency greater than 0.5) is different in the African samples versus the non-African samples.