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. 2009 Dec 27;15:2911–2918.

Table 2. Primers used for polymerase chain reaction amplification and sequencing of BMP4, VSX2, CRYBA4, GDF6, OTX2, RAX, SIX3, SIX6, SOX2, and LRP6.

Gene Exon Primer sequence (5'-3') Amplicon size (bp) Annealing temperature (°C)
BMP4
3-F
CCATCTTGCCCCTCCATTTCTA
570
65
 
3-R
CTTCTTCCCCAGGGCTTTCACT
 
 
 
4a-F
TGCTTATTTTCCCCCAGTAGGT
704
62
 
4a-R
GGCGCCGGCAGTTCTTATTCTT
 
 
 
4b-F
GGGCCAGCATGTCAGGATTAGC
575
62
 
4b-R
TGTGGGTGAGTGGATGGGAACG
 
 
 
RFLP-F
CGGGAGAAGCAGCCAAACTATG
237
65
 
RFLP-R
CTTCTTCCTGGCCCGCTGTGAG
 
 
VSX2
1-F
AGGGGGCACCTGGGACCAAC
586
72
 
1-R
CCCGGCCTGGCAGGAACTTT
 
 
 
2-F
CGGCGCGGGAGAGGTCAG
427
66
 
2-R
GCAGATTCCGCCAAACAAC
 
 
 
3-F
TGCCCAGGAGACACAGAGG
347
64
 
3-R
ACATGATCATAGGCAAGCACA
 
 
 
4-F
AGGACGCCCTGCTGGAGAAA
380
68
 
4-R
CCAAGTGCCCCTGCCTCAA
 
 
 
5-F
CTGCGGTGTGGGGAGTAAG
574
65
 
5-R
GTGGGGAACAGGGAGGATG
 
 
CRYBA4
2-F
ACTCCTGGACTCCCTATGTG
319
60
 
2-R
ATTCAACCTCCCTGTATGTG
 
 
 
3-F
TCTTGCCTTCCTGGCTCCTG
430
62
 
3-R
TGCGCAACCTGCATAATCTT
 
 
 
4-F
CCCCTGAATGGTTGTGACT
396
62
 
4-R
AACCGAGGCTTGGAGAGGAA
 
 
 
5-F
AAGGGCAAATGGCAAGGTT
415
62
 
5-R
TGGGCATCAGAGCACAAAAG
 
 
GDF6
1-F
GGCGGGGCCGGGGTTTGT
635
72
 
1-R
TAGCCTCCAGCGGGAACAGC
 
 
 
2a-F
CGGCCGACCTGCCCCCACTC
504
70
 
2a-R
CCGGCCGAAGCCCAGACTCC
 
 
 
2b-F
GCCGGCCGGCTGGGAAGTCT
557
70
 
2b-R
GCGAGCGCAGCGGGAAGTCG
 
 
 
2c-F
GCGCACGGCCTTCGCCAGTC
469
70
 
2c-R
CCAGCGCCAGCTTCCTCCTC
 
 
OTX2
3-F
TTTGCTTTGCCCTTAGTTCC
424
62
 
3-R
CCCTGTTCTCTGCTTGGTCA
 
 
 
4-F
ACGGTGGGGAGAGCATTGGT
445
62
 
4-R
CCTGGCCCCTTAGTGAGTGA
 
 
 
5a-F
CTGCCCATGTAGGATAGATT
440
61
 
5a-R
ATGCCCCCAAAGTAGGAAGT
 
 
 
5b-F
GCTTCCATCTCCCCACTGTC
562
61
 
5b-R
GGCCCTTCGTTTTTCCTTCT
 
 
RAX
1-F
TTCGCCCGCGGAGCTTGACCT
527
66
 
1-R
CCCCAACCCCGCGCCCAGTT
 
 
 
2-F
CCATCGCCGCCCTCACCA
522
66
 
2-R
ACTCTGGGCATGCCAAGTCG
 
 
 
3-F
TTGAGGGGGACGGAGTGGAG
716
69
 
3-R
GCAGGCGACAGGGAAAGAGG
 
 
SIX3
1a-F
TCATCGCCCCTCTCCTCCTCTT
398
70
 
1a-R
GCCGCTCGATGTCGCCCGTCTC
 
 
 
1b-F
CGGCGGCGGCGGCTCCAG
387
72
 
1b-R
CGCACGCGGTACTTGTCCAC
 
 
 
1c-F
GCGTGCGAGGCCATCAACAA
552
65
 
1c-R
CACGGCTTCCCTGGCTCTCA
 
 
 
2-F
GCTCGGGTTCTGCCTCTC
457
64
 
2-R
TCGGTTTGTTCTGGGGATGG
 
 
SIX6
1a-F
TGTGTCCCGCTGCCCCAATC
514
65
 
1a-R
TTCTGTTCGCCGTCCCAAATG
 
 
 
1b-F
CCTTTCACGGTGGCAACTAC
514
65
 
1b-R
GACAGACCGCGCTCCCAACTC
 
 
 
2-F
CGCCTTGCCGAGTAATCCT
447
70
 
2-R
AGCCCGCGGGTCCCTGGTCAC
 
 
 
HA-SSCP-F
TCGCCTTAACTGCTGGGGTCTT
253
67
 
HA-SSCP-R
AGTGGCCGCCTTGCTGGATA
 
 
SOX2
1-F
CGCCTCCCCTCCTCCTCTC
443
68
 
1-R
CGCCGGGGCCGGTATTTAT
 
 
 
2-F
GGGCGCCGAGTGGAAACTT
473
65
 
2-R
GGGTGCCCTGCTGCGAGTA
 
 
 
3-F
CACGGCGCAGCGCAGATGC
459
65
 
3-R
TTTGCACCCCTCCCATTTC
 
 
LRP6
1-F
CTCCTCGCCTCCCCCACTTCTG
279
72
 
1-R
CTGCTCCCGGGCCCCTTTCTCT
 
 
 
2-F
ATTTTCGACAGTCTTTGCTCAC
589
65
 
2-R
TTCTTTTCTCATAGGGGTCAGG
 
 
 
3-F
GCGCGGCCTGAGCTTTCTTTA
410
64
 
3-R
CTTCTTCCCCTCTGGCACTTAG
 
 
 
4-F
ATTTTAATGGGAGAGGTGACG
395
60
 
4-R
TTTATTCCCGCCAACTATCTTT
 
 
 
5-F
AATTTTGGCTTATCACAGTT
330
58
 
5-R
GGTCTCCCAAAGCAGTAT
 
 
 
6-F
TTTTATATTTATTTTTCAGTTC
575
50
 
6-R
ATGTTATCTTAGTCAATGTTTT
 
 
 
7-F
GGGATGGATCTCACCTTTAG
478
58
 
7-R
GATCAGCAGCCATTTCTCA
 
 
 
8-F
GGGGGAAAAGTGGTCAAA
538
56
 
8-R
GGGGGCAGTAAAGAAGGT
 
 
 
9-F
TGGGAGCAAGACATAATCATAG
690
64
 
9-R
TGGCACGCACCTGTAGTCCT
 
 
 
10-F
GGATCCTCTTGCCCCTGACA
560
62
 
10-R
TAACCCATTCCCCTCTTTCTTC
 
 
 
11-F
ATTGTAGCCGTGATTTTGTTTA
577
58
 
11-R
TCAGGAGTATCTAGGGAGTTAT
 
 
 
12-F
AAGCATGGGGTCAGAAGATAGA
777
62
 
12-R
AAAGTGCTGGGTTACGGACATA
 
 
 
13-F
TGAGGGCATGCCAAAGAAT
499
58
 
13-R
AATAAGCTACCAGGTCCAGAAT
 
 
 
14-F
GTGTGCCCATGTAGGTGTAAGC
511
64
 
14-R
TAGTGGCCCAGGAAAGAAAGTC
 
 
 
15-F
CCGCCTCAGTCTCCCAAAGT
491
68
 
15-R
TGCCAAGAAATGTGCCAAAAAC
 
 
 
16-F
TATCTAGTTTATTGGCTGTT
506
52
 
16-R
CTAAAAGTGCATGAAAGTCT
 
 
 
17-F
AAGCTGATTATACATTTGATTT
403
64
 
17-R
GGGCAGGGTGGCAGAGAA
 
 
 
18-F
TAAAGGAAGTAATGTGAAAACC
521
58
 
18-R
TGAAAAACCCCAACTGAC
 
 
 
19-F
AGGCACCTTTTGATTCTTG
495
61
 
19-R
CGCCCGGCTGATTTCTATGTAT
 
 
 
20-F
TTCAGGGCGTGGTATGTATGT
578
58
 
20-R
TATCTAAGGCCTTCTGTGTAAA
 
 
 
21-F
AGCTATTCTTGGCCTTGTTCTA
508
61
 
21-R
AGTCCTTTGAGCCTTTTATGC
 
 
 
22-F
TTTTAGCCATGATGAGGTCTTA
373
64
 
22-R
GGGGCTATATCAGGTCCACAAC
 
 
 
23-F
GAAAATTGCCTCTTGGTCTGTG
550
65
  23-R TGGTCTGCCTCATCCTTCTCTA