Table 2. Primers used for polymerase chain reaction amplification and sequencing of BMP4, VSX2, CRYBA4, GDF6, OTX2, RAX, SIX3, SIX6, SOX2, and LRP6.
Gene | Exon | Primer sequence (5'-3') | Amplicon size (bp) | Annealing temperature (°C) |
---|---|---|---|---|
BMP4 |
3-F |
CCATCTTGCCCCTCCATTTCTA |
570 |
65 |
|
3-R |
CTTCTTCCCCAGGGCTTTCACT |
|
|
|
4a-F |
TGCTTATTTTCCCCCAGTAGGT |
704 |
62 |
|
4a-R |
GGCGCCGGCAGTTCTTATTCTT |
|
|
|
4b-F |
GGGCCAGCATGTCAGGATTAGC |
575 |
62 |
|
4b-R |
TGTGGGTGAGTGGATGGGAACG |
|
|
|
RFLP-F |
CGGGAGAAGCAGCCAAACTATG |
237 |
65 |
|
RFLP-R |
CTTCTTCCTGGCCCGCTGTGAG |
|
|
VSX2 |
1-F |
AGGGGGCACCTGGGACCAAC |
586 |
72 |
|
1-R |
CCCGGCCTGGCAGGAACTTT |
|
|
|
2-F |
CGGCGCGGGAGAGGTCAG |
427 |
66 |
|
2-R |
GCAGATTCCGCCAAACAAC |
|
|
|
3-F |
TGCCCAGGAGACACAGAGG |
347 |
64 |
|
3-R |
ACATGATCATAGGCAAGCACA |
|
|
|
4-F |
AGGACGCCCTGCTGGAGAAA |
380 |
68 |
|
4-R |
CCAAGTGCCCCTGCCTCAA |
|
|
|
5-F |
CTGCGGTGTGGGGAGTAAG |
574 |
65 |
|
5-R |
GTGGGGAACAGGGAGGATG |
|
|
CRYBA4 |
2-F |
ACTCCTGGACTCCCTATGTG |
319 |
60 |
|
2-R |
ATTCAACCTCCCTGTATGTG |
|
|
|
3-F |
TCTTGCCTTCCTGGCTCCTG |
430 |
62 |
|
3-R |
TGCGCAACCTGCATAATCTT |
|
|
|
4-F |
CCCCTGAATGGTTGTGACT |
396 |
62 |
|
4-R |
AACCGAGGCTTGGAGAGGAA |
|
|
|
5-F |
AAGGGCAAATGGCAAGGTT |
415 |
62 |
|
5-R |
TGGGCATCAGAGCACAAAAG |
|
|
GDF6 |
1-F |
GGCGGGGCCGGGGTTTGT |
635 |
72 |
|
1-R |
TAGCCTCCAGCGGGAACAGC |
|
|
|
2a-F |
CGGCCGACCTGCCCCCACTC |
504 |
70 |
|
2a-R |
CCGGCCGAAGCCCAGACTCC |
|
|
|
2b-F |
GCCGGCCGGCTGGGAAGTCT |
557 |
70 |
|
2b-R |
GCGAGCGCAGCGGGAAGTCG |
|
|
|
2c-F |
GCGCACGGCCTTCGCCAGTC |
469 |
70 |
|
2c-R |
CCAGCGCCAGCTTCCTCCTC |
|
|
OTX2 |
3-F |
TTTGCTTTGCCCTTAGTTCC |
424 |
62 |
|
3-R |
CCCTGTTCTCTGCTTGGTCA |
|
|
|
4-F |
ACGGTGGGGAGAGCATTGGT |
445 |
62 |
|
4-R |
CCTGGCCCCTTAGTGAGTGA |
|
|
|
5a-F |
CTGCCCATGTAGGATAGATT |
440 |
61 |
|
5a-R |
ATGCCCCCAAAGTAGGAAGT |
|
|
|
5b-F |
GCTTCCATCTCCCCACTGTC |
562 |
61 |
|
5b-R |
GGCCCTTCGTTTTTCCTTCT |
|
|
RAX |
1-F |
TTCGCCCGCGGAGCTTGACCT |
527 |
66 |
|
1-R |
CCCCAACCCCGCGCCCAGTT |
|
|
|
2-F |
CCATCGCCGCCCTCACCA |
522 |
66 |
|
2-R |
ACTCTGGGCATGCCAAGTCG |
|
|
|
3-F |
TTGAGGGGGACGGAGTGGAG |
716 |
69 |
|
3-R |
GCAGGCGACAGGGAAAGAGG |
|
|
SIX3 |
1a-F |
TCATCGCCCCTCTCCTCCTCTT |
398 |
70 |
|
1a-R |
GCCGCTCGATGTCGCCCGTCTC |
|
|
|
1b-F |
CGGCGGCGGCGGCTCCAG |
387 |
72 |
|
1b-R |
CGCACGCGGTACTTGTCCAC |
|
|
|
1c-F |
GCGTGCGAGGCCATCAACAA |
552 |
65 |
|
1c-R |
CACGGCTTCCCTGGCTCTCA |
|
|
|
2-F |
GCTCGGGTTCTGCCTCTC |
457 |
64 |
|
2-R |
TCGGTTTGTTCTGGGGATGG |
|
|
SIX6 |
1a-F |
TGTGTCCCGCTGCCCCAATC |
514 |
65 |
|
1a-R |
TTCTGTTCGCCGTCCCAAATG |
|
|
|
1b-F |
CCTTTCACGGTGGCAACTAC |
514 |
65 |
|
1b-R |
GACAGACCGCGCTCCCAACTC |
|
|
|
2-F |
CGCCTTGCCGAGTAATCCT |
447 |
70 |
|
2-R |
AGCCCGCGGGTCCCTGGTCAC |
|
|
|
HA-SSCP-F |
TCGCCTTAACTGCTGGGGTCTT |
253 |
67 |
|
HA-SSCP-R |
AGTGGCCGCCTTGCTGGATA |
|
|
SOX2 |
1-F |
CGCCTCCCCTCCTCCTCTC |
443 |
68 |
|
1-R |
CGCCGGGGCCGGTATTTAT |
|
|
|
2-F |
GGGCGCCGAGTGGAAACTT |
473 |
65 |
|
2-R |
GGGTGCCCTGCTGCGAGTA |
|
|
|
3-F |
CACGGCGCAGCGCAGATGC |
459 |
65 |
|
3-R |
TTTGCACCCCTCCCATTTC |
|
|
LRP6 |
1-F |
CTCCTCGCCTCCCCCACTTCTG |
279 |
72 |
|
1-R |
CTGCTCCCGGGCCCCTTTCTCT |
|
|
|
2-F |
ATTTTCGACAGTCTTTGCTCAC |
589 |
65 |
|
2-R |
TTCTTTTCTCATAGGGGTCAGG |
|
|
|
3-F |
GCGCGGCCTGAGCTTTCTTTA |
410 |
64 |
|
3-R |
CTTCTTCCCCTCTGGCACTTAG |
|
|
|
4-F |
ATTTTAATGGGAGAGGTGACG |
395 |
60 |
|
4-R |
TTTATTCCCGCCAACTATCTTT |
|
|
|
5-F |
AATTTTGGCTTATCACAGTT |
330 |
58 |
|
5-R |
GGTCTCCCAAAGCAGTAT |
|
|
|
6-F |
TTTTATATTTATTTTTCAGTTC |
575 |
50 |
|
6-R |
ATGTTATCTTAGTCAATGTTTT |
|
|
|
7-F |
GGGATGGATCTCACCTTTAG |
478 |
58 |
|
7-R |
GATCAGCAGCCATTTCTCA |
|
|
|
8-F |
GGGGGAAAAGTGGTCAAA |
538 |
56 |
|
8-R |
GGGGGCAGTAAAGAAGGT |
|
|
|
9-F |
TGGGAGCAAGACATAATCATAG |
690 |
64 |
|
9-R |
TGGCACGCACCTGTAGTCCT |
|
|
|
10-F |
GGATCCTCTTGCCCCTGACA |
560 |
62 |
|
10-R |
TAACCCATTCCCCTCTTTCTTC |
|
|
|
11-F |
ATTGTAGCCGTGATTTTGTTTA |
577 |
58 |
|
11-R |
TCAGGAGTATCTAGGGAGTTAT |
|
|
|
12-F |
AAGCATGGGGTCAGAAGATAGA |
777 |
62 |
|
12-R |
AAAGTGCTGGGTTACGGACATA |
|
|
|
13-F |
TGAGGGCATGCCAAAGAAT |
499 |
58 |
|
13-R |
AATAAGCTACCAGGTCCAGAAT |
|
|
|
14-F |
GTGTGCCCATGTAGGTGTAAGC |
511 |
64 |
|
14-R |
TAGTGGCCCAGGAAAGAAAGTC |
|
|
|
15-F |
CCGCCTCAGTCTCCCAAAGT |
491 |
68 |
|
15-R |
TGCCAAGAAATGTGCCAAAAAC |
|
|
|
16-F |
TATCTAGTTTATTGGCTGTT |
506 |
52 |
|
16-R |
CTAAAAGTGCATGAAAGTCT |
|
|
|
17-F |
AAGCTGATTATACATTTGATTT |
403 |
64 |
|
17-R |
GGGCAGGGTGGCAGAGAA |
|
|
|
18-F |
TAAAGGAAGTAATGTGAAAACC |
521 |
58 |
|
18-R |
TGAAAAACCCCAACTGAC |
|
|
|
19-F |
AGGCACCTTTTGATTCTTG |
495 |
61 |
|
19-R |
CGCCCGGCTGATTTCTATGTAT |
|
|
|
20-F |
TTCAGGGCGTGGTATGTATGT |
578 |
58 |
|
20-R |
TATCTAAGGCCTTCTGTGTAAA |
|
|
|
21-F |
AGCTATTCTTGGCCTTGTTCTA |
508 |
61 |
|
21-R |
AGTCCTTTGAGCCTTTTATGC |
|
|
|
22-F |
TTTTAGCCATGATGAGGTCTTA |
373 |
64 |
|
22-R |
GGGGCTATATCAGGTCCACAAC |
|
|
|
23-F |
GAAAATTGCCTCTTGGTCTGTG |
550 |
65 |
23-R | TGGTCTGCCTCATCCTTCTCTA |